View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19332_high_1 (Length: 449)
Name: NF19332_high_1
Description: NF19332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19332_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 2 - 441
Target Start/End: Original strand, 2377253 - 2377688
Alignment:
| Q |
2 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377253 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
2377352 |
T |
|
| Q |
102 |
ccttctcaacaccaagcaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
201 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377353 |
ccatctcaacaccaaacaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
2377452 |
T |
|
| Q |
202 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctctctcgac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
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| T |
2377453 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatgcccaccactctctcaacctcaaacttcatctct-tc-ac |
2377550 |
T |
|
| Q |
302 |
cttctactcaacacaatccacactccaaacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtg |
401 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377551 |
cttctactcaacacaatccacacttcagacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtg |
2377650 |
T |
|
| Q |
402 |
aaattggtgttcaaccagataaacacacgttccctatgct |
441 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||| |||| |
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| T |
2377651 |
aaattgatgttcaacc--ataaacacacgttccctttgct |
2377688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 130 - 441
Target Start/End: Original strand, 28198317 - 28198621
Alignment:
| Q |
130 |
aatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatcacttccagtatctatctactcatttcaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| || |||| |||| ||| |
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| T |
28198317 |
aatgcaattgcatccctttcaaagaaccatcaaaacctgaaacaatggaatcaaattcaatccacgatcatcacctccggtctctacacactc----caa |
28198412 |
T |
|
| Q |
230 |
cacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctctctcgaccttctactcaacacaatccacactccaa |
329 |
Q |
| |
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|||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| | |
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| T |
28198413 |
gacgccatttt-cgtcgccaaactcatccaatgcgcaccactctctcaacctcaaacttcatctct-tcg-ccttctcctcaacacaatccacactccca |
28198509 |
T |
|
| Q |
330 |
acactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaaattggtgttcaaccagataaacacac |
429 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
28198510 |
acactcgtctcttcaacaaactcataacatctttccctaaaacaacacttctttcttatgccaaaatgcatgaaatgggtgttcaaccagataaacacac |
28198609 |
T |
|
| Q |
430 |
gttccctatgct |
441 |
Q |
| |
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||||||| |||| |
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|
| T |
28198610 |
gttccctttgct |
28198621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 13325273 - 13325188
Alignment:
| Q |
8 |
aactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactcc-aaacttcaatttcatttttgtt |
92 |
Q |
| |
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||||| |||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
13325273 |
aactctaatcaaactttttatccaaaatccctcaaaataaatccattaaccactctcaactccaaaatttcaatttcatttttgtt |
13325188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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