View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19333_high_5 (Length: 394)
Name: NF19333_high_5
Description: NF19333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19333_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 29556577 - 29556172
Alignment:
| Q |
1 |
ttgttcattctctcctctgcctatttattcttctctcaacnnnnnnn-cactcaaaaactaatatgcaacatttgttgaacaaat------------tca |
87 |
Q |
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| T |
29556577 |
ttgttcattctctcctctgcctatttattcttctctcaacaaaaaaaacactcaaaa-ctaatatgcaacatttgttgaacaactactacaaattgttca |
29556479 |
T |
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| Q |
88 |
acaaattaaagacctatctgagagtgtacttctaaaggaattagaaccacaaatttgtgttgatgatgaaaagcatttgtcacaaccaaaatcattattc |
187 |
Q |
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| T |
29556478 |
acaaattaaagacctatctgagagtgtacttctaaaggaattagagccacaaatttgtgttgatgatgaaaagcatttgtcacaaccaaaatcattattc |
29556379 |
T |
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| Q |
188 |
tcttcttcaacaatggtatccaacattttcttcattggaatccttgtcacagacacaaacctcggtggagcaacctcggtggtgattaattttgcaattt |
287 |
Q |
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| T |
29556378 |
tcttcttcaacaatggtatccaacattttcttcattggaatccttgtcacggacacaaaccttggtggagcagcctcggtggtgattaattttgcaattt |
29556279 |
T |
|
| Q |
288 |
gcttcaacttgttggccatttcaagaaattctagtgttgttggcataaacaagtgatgaacatgtgaagaaaaaggagacataagataaaaacaagagta |
387 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29556278 |
gcttcaacttgttggccattttaagaaattctagtgttgttggcataaacaagtgatgaacatgtgaagaaaaaggagacataagataaaaagaagagta |
29556179 |
T |
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| Q |
388 |
gtagtgt |
394 |
Q |
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| T |
29556178 |
gtagtgt |
29556172 |
T |
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