View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19333_low_1 (Length: 534)
Name: NF19333_low_1
Description: NF19333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19333_low_1 |
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| [»] scaffold0191 (2 HSPs) |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 19541 - 19149
Alignment:
| Q |
1 |
acgaggcaaggcacataaacagagttttttcaaactgtgtttgaaccaa--tctctataacggtccacagaatctcctcaaaagaatctaataaagcttg |
98 |
Q |
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| T |
19541 |
acgaggaaaggcacatcaatagagttttttcaaactgtgtttgaaccacagtcactatacaggtccacaaaatctcctcaaaagaatctaataaagcttg |
19442 |
T |
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| Q |
99 |
taacagtttctacaatgataggagcaatatcatatttccttttaaaccaaaaaggagcaactcaggttttcttttaatctatttttcaataacaacatat |
198 |
Q |
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| T |
19441 |
taacactttctacaatgataggagcaatatcatatttccttttaaaccaaaaaggagcaactcaggttttcttttaatctatttttcagtaacaacatat |
19342 |
T |
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| Q |
199 |
actaaaacacaagatcaagatttgcattgtgaaattaccttaatggtcccattagcatcctatttcaaagcttcttggtgcttattgtccaattctctag |
298 |
Q |
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| T |
19341 |
actaaaacacaagatcaagatttgcattgtgaaattaccttaatgatcccaatagcatcgtgtttcaaagcttcttggtgcttattgtccaattctctag |
19242 |
T |
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| Q |
299 |
catgagaaacaaagggttgcttctcctgaagagaaaaggagattatgctcaacaattttgactcatttgagcttatctaagtgcttgtgagat |
391 |
Q |
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| T |
19241 |
catgagaaacaaagggttgcttctcctgaagagaaaaggagattattctcaacaattttgactcatttgagcttacttaagtgtttgtgagat |
19149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 417 - 516
Target Start/End: Complemental strand, 19150 - 19051
Alignment:
| Q |
417 |
attacgtttatgatcacatatatatggaaataaagttagggcaggcaagtagttatttgacctcctttgacatatttttccacttttcaaaccctatcct |
516 |
Q |
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| T |
19150 |
attacgtttatgatcacatatatatggaaataaagttagggcaggcaagtagttattttacctcctttgacatatttttccacttttcaaaccctatcct |
19051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 10430604 - 10430469
Alignment:
| Q |
196 |
tatactaaaacacaagatcaagatttgcattgtgaaattaccttaatggtcccattagcatcctatttcaaagcttcttggtgcttattgtccaattctc |
295 |
Q |
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| T |
10430604 |
tatattaaaaaacaagatcaacatttg-attttcaacttacctttatgatctcataagcctcttgtttcaaagcatcttggtgtttattgtccaattctc |
10430506 |
T |
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| Q |
296 |
tagcatgagaaacaaagggttgcttctcctgaagaga |
332 |
Q |
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| T |
10430505 |
tagcatgagaaacaaatggttgcctctcctgaagaga |
10430469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 36044 - 35973
Alignment:
| Q |
261 |
tttcaaagcttcttggtgcttattgtccaattctctagcatgagaaacaaagggttgcttctcctgaagaga |
332 |
Q |
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| T |
36044 |
tttcaaagcatcttggtgtttattgtccaattctctagcatgagaaacaaatggttgcctctcctgaagaga |
35973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 35976 - 35926
Alignment:
| Q |
387 |
gagataaagaaattacgtgtttattgaccaattacgtttatgatcacatat |
437 |
Q |
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| T |
35976 |
gagataaagaaattaagtgtttattgtccaattatctttataatcacatat |
35926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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