View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19333_low_3 (Length: 434)
Name: NF19333_low_3
Description: NF19333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19333_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 46129935 - 46129524
Alignment:
| Q |
9 |
aatattcatacctgcagttggggcatatcatcccttttcaaaaactgcacaaatcgccggacaacatctgcctgcttcaccttatcaattagacggatgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46129935 |
aatattcatacctgcagttggggcatatcatcccttttcaaaaactgcacaaatcgccggacaacatctgcctgcttcactttatcaattagacggatgt |
46129836 |
T |
|
| Q |
109 |
agcctgaacagagatgtgtcaataaatgttcaaa-tttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatag |
207 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46129835 |
agcctgaacagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgtgcaccacatcatgatttaggaaaacacatacgcctatag |
46129736 |
T |
|
| Q |
208 |
attatataatgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaa |
307 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129735 |
attatataatgtgtaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaaacgagtaa |
46129636 |
T |
|
| Q |
308 |
aacaccccaggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacag |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46129635 |
aacaccccaggtaaaatacaaccactacattcataccccctgacagtagctttccaaactgagtagctgcttccagttgtgcagcagggtcgtccgacag |
46129536 |
T |
|
| Q |
408 |
taagtccttttt |
419 |
Q |
| |
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| T |
46129535 |
taagtccttttt |
46129524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 46702716 - 46702317
Alignment:
| Q |
12 |
attcatacctgcagttggggcatatcatcccttttcaaaaactgcacaaatcgccggacaacatctgcctgcttcaccttatcaattagacggatgtagc |
111 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
46702716 |
attcatacctgcagttggggcatatcatcccttgtcaaaaactgcacaaaccgcgggacaacatctgcctgcttcaccttatcaattagatagatgtggc |
46702617 |
T |
|
| Q |
112 |
ctgaacagagatgtgtcaataaatgttcaaatttggttaactattaagaacttatgtgcaccacatcatgatttaggaaaacacatacacctatagatta |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46702616 |
ctgaacacagatgtgtcaataaatgttcaaatttggttaacaattaagaacttatgtgcactacatcatgatttaggaaaacacatacacctatagatta |
46702517 |
T |
|
| Q |
212 |
tataatgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcat-aacataagaaacgagtaaaac |
310 |
Q |
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|||| ||| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||| | ||||||||||| ||||||||||||||||| || |
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| T |
46702516 |
cataacgtgtaacactttgttttattaaaagtaatctagatgaggacattacatagtggcatcgt-taatttaggcataaacataagaaacgagtattac |
46702418 |
T |
|
| Q |
311 |
accccaggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaa |
410 |
Q |
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||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702417 |
accccagataaaatataatgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgtccgacagtaa |
46702318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 46123910 - 46123516
Alignment:
| Q |
12 |
attcatacctgcagttggggcatatcatcccttttcaaaaactgcacaaatcgccggacaacatctgcctgcttcaccttatcaattagacggatgtagc |
111 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| | || |||||||||||||||||||| ||||||||| |
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| T |
46123910 |
attcatacctgcaattggggcatatcatcccttgtcaaaaactgcacaaaccgcaggacaacaccagctcgcttcaccttatcaattagagggatgtagc |
46123811 |
T |
|
| Q |
112 |
ctgaacagagatgtgtcaataaatgttc-aaatttggttaactattaagaacttatgtgcaccacatcatgatttagg--aaaacacatacac--ctata |
206 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||| | || ||||||||||||||| || |||||||||| |||| |
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| T |
46123810 |
ctgaacagagatgtgtcggcaaatgttcaaaatttggttaaaaattaagaacttatgagaactacatcatgatttagggaaacacacatacactactatg |
46123711 |
T |
|
| Q |
207 |
gattatataatgtgcaacactttgattcattaaaagtaatctagatgaggacaatacacagtggcatcatagaatttaggcataacataagaa-acgagt |
305 |
Q |
| |
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|||| ||||| || ||||| || |||||||||| || || |||||| |||||||||| |||||| ||||||||||| |||| |||| | |||| |
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| T |
46123710 |
ttatatacaatgtataatactttttttttttaaaagtaaactcgaggaggacgttacacagtggtatcatataatttaggcatcacattagaagaagagt |
46123611 |
T |
|
| Q |
306 |
aaaacaccccaggtaaaatacaacgactacattcataccccctgacagtagctttccaaactgagtagttgcttccagttgtgcagcagggtcgt |
400 |
Q |
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| ||| |||| ||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46123610 |
attacatcccaaataaaatataatgattacattcataccccctgatagtagctttccaaactgagtagttgcttcaagttgtgcagcagggtcgt |
46123516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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