View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19333_low_4 (Length: 398)
Name: NF19333_low_4
Description: NF19333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19333_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 377
Target Start/End: Complemental strand, 5429289 - 5428931
Alignment:
| Q |
27 |
gactcaaagtcaatataaacatacaaattaaatcaagggaaaaaa--taaataattaagaagatgataagaaataagaatttcaaaacggagcttttccc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5429289 |
gactcaaagtcaatataaacatacaaattaaatccagggaaaaaaaataaataaataagaagatgataagaaataagaatttcaaaacggagcttttccc |
5429190 |
T |
|
| Q |
125 |
tctcacatccataaac------catagattttgaaaatgtacaagtaacactgaaaatcacattcgaagctttcagcaaaaattcacaatggacaagaag |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5429189 |
tctcacatccataaacataaaccatagattttgaaaatgtacaagtaacactgaaaatcacattcgaagctttcagcaaaaattcacaatggacaagaag |
5429090 |
T |
|
| Q |
219 |
ctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaaaatcctctaaatcctctctcaaaaccctaattcatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5429089 |
ctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaaaatcctctaaatcctctctcaaaaccctaattcatt |
5428990 |
T |
|
| Q |
319 |
caatcaaaccctcttccaatctcatttcttcactccctccctctctctacgaatctatc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5428989 |
caatcaaaccctcttccaatctcatttcttctctccctccctctctctacgaatctatc |
5428931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University