View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19334_low_1 (Length: 645)
Name: NF19334_low_1
Description: NF19334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19334_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 244 - 456
Target Start/End: Original strand, 15013273 - 15013485
Alignment:
| Q |
244 |
tcattagattttgcaataagtaagagtcaagttttaccttgtgaggaattcctcccaacagaatcattggagctctttcttcttctctcattgtgccctg |
343 |
Q |
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| T |
15013273 |
tcattagattttgcaataagtaagagtcaagttttaccttgtgaggaattcctcccaacagaatcatgggagctctttcttcttctctcattgtgccctg |
15013372 |
T |
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| Q |
344 |
ccagtctccttctacaacttctttttgaatcatcaaattctgatacaacatggaacctaaagaaccagtccccatcaccacatttttcatattaattatc |
443 |
Q |
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| T |
15013373 |
ccagtctccttctacaacttctttttgaatcatcaaattctgatacaacatggaacctaaagaaccagtccccatcaccacatttttcatattaattatc |
15013472 |
T |
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| Q |
444 |
acaattaaccaat |
456 |
Q |
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|||||||||||| |
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| T |
15013473 |
tcaattaaccaat |
15013485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 15013035 - 15013194
Alignment:
| Q |
6 |
tagattatacttacgaatggaagatacattcaatgatgtttatgtaaatttgagacggtcgaggactatagttactctatcgcatacatttaacgaccnn |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15013035 |
tagactatagttacgaatggaagatacattcaatgatgtttatgaaaatttgagacggtcgaggactatagttactctatcgcatacatttaatgacaaa |
15013134 |
T |
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| Q |
106 |
nnnnnttgtgtactcttatttatcttcaatacatcttcattcaatttctatgcaagaatc |
165 |
Q |
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| T |
15013135 |
aaaaattgtgtactcttatttattttcaatacatcttcattcaatttctatgcaagaatc |
15013194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 519 - 645
Target Start/End: Original strand, 15013548 - 15013674
Alignment:
| Q |
519 |
ctccctcaattcctaattataagaccgttcgcnnnnnnntgtttgtccctaaatataagataattttttccaactataccctttatgaatattatcaatt |
618 |
Q |
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| T |
15013548 |
ctccctcagtccctaattataagaccgttcgcaaaaaaatgtttgtccctaaatataagataattttttccaactataccctttatgaatattatcaatt |
15013647 |
T |
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| Q |
619 |
gtcttggaacatgaaaagtcaacattg |
645 |
Q |
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| T |
15013648 |
gtcttggaacatgaaaagtcaacattg |
15013674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 644
Target Start/End: Complemental strand, 32307340 - 32307280
Alignment:
| Q |
584 |
ttttccaactataccctttatgaatattatcaattgtcttggaacatgaaaagtcaacatt |
644 |
Q |
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|||| ||||| ||| | |||| |||||||| ||||||||||||| ||||||| |||||||| |
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| T |
32307340 |
tttttcaactttacaccttattaatattattaattgtcttggaatatgaaaaatcaacatt |
32307280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 3967037 - 3966981
Alignment:
| Q |
351 |
ccttctacaacttctttttgaatcatcaaattctgatacaacatggaacctaaagaa |
407 |
Q |
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|||||||||||| |||||| | ||||||||||||||||| |||| |||||| |||| |
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| T |
3967037 |
ccttctacaactcctttttaagtcatcaaattctgatacctcatgaaacctatagaa |
3966981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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