View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19334_low_3 (Length: 404)
Name: NF19334_low_3
Description: NF19334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19334_low_3 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 48883393 - 48883012
Alignment:
| Q |
20 |
ttcaaagcgctttcgattccttcggtgatctcactgttacgcctggttttgatccttctaagaaaggtgctgatgaacattaccgttatgctacggttaa |
119 |
Q |
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| T |
48883393 |
ttcaaagcgctttcgattccttcggtgatctcactgttacgcctggttttgatccttctaagaaaggtgctgatgaacattaccgttatgctacggttaa |
48883294 |
T |
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| Q |
120 |
gtttgggaaggttacgcttgagcgacctaagttttggtgtggtgaagggaatgctcaagagttgaagatgcttcccagacatgccaggttgcagaggatg |
219 |
Q |
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| T |
48883293 |
gtttgggaaggttacgcttgagcgacctaagttttggtgtggtgaagggaatgctcaagagttgaagatgcttcccagacatgccaggttgcagaggatg |
48883194 |
T |
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| Q |
220 |
acttatgcttctaagatgaaagttgatgttcacatccaggttaggga--nnnnnnnnactcctttacaaagttttcatttttaaatgttggttagcttga |
317 |
Q |
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| T |
48883193 |
acttatgcttctaagatgaaagttgatgttcacatccaggttagggattttttttttactcctttacaaagttttcatttttaaatgttggttagcttga |
48883094 |
T |
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| Q |
318 |
tttggaatttttgttcttatttcgtgtttttatgttatgagataatgcttttttgacttaaaatttacttgggtgtcctttg |
399 |
Q |
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| T |
48883093 |
tttggaatttttgttcttatttcgtgtttttatgttatgagataatgcttttttgacttaaaatttacttgggtgtcctttg |
48883012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 53014648 - 53014564
Alignment:
| Q |
28 |
gctttcgattccttcggtgatctcactgttacgcctggtttt-gatccttctaagaaaggtgctgatgaacattaccgttatgct |
111 |
Q |
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| T |
53014648 |
gctttcaattcctttggagagcttacagttacgcctggtttttgacccttctacgaaaggagaaaatgaacattaccgttatgct |
53014564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 399
Target Start/End: Original strand, 30302 - 30662
Alignment:
| Q |
27 |
cgctttcgattccttcggtgatctcactgttacgcctggttttgatccttctaagaaaggtgctgatgaacattaccgttatgctacggttaagtttggg |
126 |
Q |
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| T |
30302 |
cgcttttgattccttcggtgatctcactgttacgccgggttttgatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttggg |
30401 |
T |
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| Q |
127 |
aaggttacgcttgagcgacctaagttttggtgtggtgaagggaatgctcaagagttgaagatgcttcccagacatgccaggttgcagaggatgacttatg |
226 |
Q |
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| T |
30402 |
aatgttacgcttgaacgacctaagttttggtgtggtgaagggaatgctcaagagatgaagatgcttccgagacatgctaggttacagaggatgacttatg |
30501 |
T |
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| Q |
227 |
cttctaagatgaaagttgatgttcacatccaggttagggannnnnnnnactc-ctttacaaagttttcatttttaaatgttggttagcttgatttggaa- |
324 |
Q |
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| T |
30502 |
cttccaaagttaaagttgatgttcaacttcaggtt-------------actcattttataaagttttcattttgaaatgtgggttagcttcattttgaat |
30588 |
T |
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| Q |
325 |
tttttgttcttatttcgtgtttttatgttatgagataatgcttttttgacttaaaatttacttgggtgtcctttg |
399 |
Q |
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| T |
30589 |
tttttgttcttatttcatgtttttgtgttatgacct-ataattttttgacttgaaaattacttgggtgtcttttg |
30662 |
T |
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