View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19335_high_1_N (Length: 544)
Name: NF19335_high_1_N
Description: NF19335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19335_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 73 - 512
Target Start/End: Original strand, 34674929 - 34675364
Alignment:
| Q |
73 |
tatatgtttatggatcattcattactatatgatcaaagaaatatgtgaagagaaaatagaaaatgtgaaatgtaactgaaaataattaataat----att |
168 |
Q |
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| T |
34674929 |
tatatgtatatggatcattcattactataagatcaaagaaatat------------ta-aaaatgtgaaatgtaactgaaaataattaataattaatatt |
34675015 |
T |
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| Q |
169 |
agatctgatatt---tatttgtgaccattgagttttgtaataacttttgaaactaaaactgattattacttgaaaacacgatgta--gaagggaaagtta |
263 |
Q |
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| T |
34675016 |
agatctgatattctttatttgtgaccattgagttttgtaataacttttgaaactaaa-ctgattattacttgaaaacacgatgtatagaagggaaagtta |
34675114 |
T |
|
| Q |
264 |
gaagataaatagattcatattttgtatgactcaatannnnnnn-attgctttgtagcgcaggagaaaaaatggcatcatcaagctcatacaattcaccat |
362 |
Q |
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| T |
34675115 |
gaagataaatagattcatattttgtatgactcaatattttttttattgctttgtagcgcaggagaaaaaatggcatcatcaagctcatacaattcaccat |
34675214 |
T |
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| Q |
363 |
gtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaa |
462 |
Q |
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| T |
34675215 |
gtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaa |
34675314 |
T |
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| Q |
463 |
gatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctc |
512 |
Q |
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| T |
34675315 |
gatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctc |
34675364 |
T |
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Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 328 - 512
Target Start/End: Original strand, 43583166 - 43583353
Alignment:
| Q |
328 |
aaaaatggcatcatca---agctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatacttt |
424 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| |||||||||||| | | |||||||||||||||| |||||||||||||| ||||| |
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| T |
43583166 |
aaaaatggcatcatcatccagctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttc |
43583265 |
T |
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| Q |
425 |
ccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctc |
512 |
Q |
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| T |
43583266 |
cctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctc |
43583353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 12360861 - 12360773
Alignment:
| Q |
392 |
tgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaa |
480 |
Q |
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| T |
12360861 |
tgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaa |
12360773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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