View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19335_high_2 (Length: 419)

Name: NF19335_high_2
Description: NF19335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19335_high_2
NF19335_high_2
[»] chr7 (13 HSPs)
chr7 (160-410)||(36221990-36222235)
chr7 (160-373)||(36217999-36218207)
chr7 (166-376)||(35938799-35939004)
chr7 (186-377)||(32727038-32727224)
chr7 (169-377)||(35976915-35977118)
chr7 (169-377)||(35998327-35998530)
chr7 (166-373)||(35981485-35981687)
chr7 (166-373)||(36002897-36003099)
chr7 (30-95)||(36221861-36221926)
chr7 (254-377)||(35957460-35957583)
chr7 (186-358)||(35946271-35946438)
chr7 (169-359)||(35951909-35952094)
chr7 (30-94)||(36217870-36217934)
[»] chr1 (2 HSPs)
chr1 (169-374)||(18125183-18125383)
chr1 (245-374)||(18117530-18117659)
[»] chr2 (1 HSPs)
chr2 (273-377)||(26329140-26329244)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 160 - 410
Target Start/End: Original strand, 36221990 - 36222235
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 36222184  T
Q  360 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtgg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222185 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtgg 36222235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 160 - 373
Target Start/End: Original strand, 36217999 - 36218207
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 259  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 359  Q
     ||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| |||| || |||||||||| |||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttcc 36218193  T
Q  360 ttgtatcccaaaga 373  Q
    ||||||||||||||    
T  36218194 ttgtatcccaaaga 36218207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 166 - 376
Target Start/End: Complemental strand, 35939004 - 35938799
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 265  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  266 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 365  Q
     |||||||| ||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| | |||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatat 35938810  T
Q  366 cccaaagatta 376  Q
    |||||||||||    
T  35938809 cccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 186 - 377
Target Start/End: Complemental strand, 32727224 - 32727038
Alignment:
Q  186 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 285  Q
    ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| || |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  286 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 377  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||  |||||| | |||||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 32727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 377
Target Start/End: Complemental strand, 35977118 - 35976915
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 368  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35976924  T
Q  369 aaagattat 377  Q
    |||||||||    
T  35976923 aaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 377
Target Start/End: Complemental strand, 35998530 - 35998327
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 368  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35998336  T
Q  369 aaagattat 377  Q
    |||||||||    
T  35998335 aaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 35981687 - 35981485
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 265  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| ||||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  266 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 365  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  35981592 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 35981493  T
Q  366 cccaaaga 373  Q
    ||||||||    
T  35981492 cccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 373
Target Start/End: Complemental strand, 36003099 - 36002897
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 265  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| ||||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  266 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 365  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  36003004 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 36002905  T
Q  366 cccaaaga 373  Q
    ||||||||    
T  36002904 cccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 36221861 - 36221926
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 95  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 254 - 377
Target Start/End: Complemental strand, 35957583 - 35957460
Alignment:
Q  254 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 353  Q
    |||||| ||||| |||||||||||||    |||||||||||||||  |||||||||| |||||| |||||||||| ||| |||| || ||||||||||||    
T  35957583 tgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttat 35957484  T
Q  354 ttttccttgtatcccaaagattat 377  Q
    |||||| | |||||||||||||||    
T  35957483 ttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 358
Target Start/End: Complemental strand, 35946438 - 35946271
Alignment:
Q  186 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 285  Q
    |||||||| ||||||||| |||||||| |||||| ||| |     ||||||  |||||| || |||  |||||| ||||| |||||||||||||||| ||    
T  35946438 aacattagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatg 35946344  T
Q  286 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttc 358  Q
    |||| ||||||||  |||||||||| |||||| |||||||||| ||| | || || |||||||||||||||||    
T  35946343 atatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttatttttc 35946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 359
Target Start/End: Complemental strand, 35952094 - 35951909
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| |     ||||||  ||| || ||||||  ||  |||||||| ||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagt-----aagtgggaatttgtcagagactctgctatttggaattt 35952000  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 359  Q
    ||||||| |||||| |||||||||||||||  | ||||||||||||||| ||||| |||||||| | || |||||| |||| | |||||||    
T  35951999 agaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatcctatctaagacattgtattgcctctttttcc 35951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 36217870 - 36217934
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 94  Q
    ||||||||| |||||||||||||||||  ||||   | ||||| | |||||||||||||||||||    
T  36217870 ccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcatt 36217934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 169 - 374
Target Start/End: Complemental strand, 18125383 - 18125183
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 268  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 368  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||| || ||||||||||| ||| | |||||     
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcct 18125189  T
Q  369 aaagat 374  Q
    ||||||    
T  18125188 aaagat 18125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 18117659 - 18117530
Alignment:
Q  245 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgt 344  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||     
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgc 18117560  T
Q  345 tttgcttatttttccttgtatcccaaagat 374  Q
    ||||||||  || |  ||||||||||||||    
T  18117559 tttgcttacattgctatgtatcccaaagat 18117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 377
Target Start/End: Original strand, 26329140 - 26329244
Alignment:
Q  273 caaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaag 372  Q
    ||||| |||| ||||||||||||||   | || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | ||||||||    
T  26329140 caaaacaaagatgatattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaag 26329239  T
Q  373 attat 377  Q
    |||||    
T  26329240 attat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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