View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19335_high_3 (Length: 402)
Name: NF19335_high_3
Description: NF19335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19335_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 90 - 350
Target Start/End: Complemental strand, 2018587 - 2018327
Alignment:
| Q |
90 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggttagtagcaacag |
189 |
Q |
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| T |
2018587 |
aacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacag |
2018488 |
T |
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| Q |
190 |
catccctcgtcggaaggaacgacagaatgtgatacagaacgtcgtcaggtagtgattccatggttgttcttgttcacagcgaggtataagtgtgaaccct |
289 |
Q |
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| T |
2018487 |
catccctcgtcggaaggaacgacagaatgtgacacagaacgtcgtcaggtagtgattccatggttgttcttgttcacagcgaggtataagtgtgaaccct |
2018388 |
T |
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| Q |
290 |
agttttatttttgtagggttaatattgtgcaagggttaattccgcaatctttggacgagac |
350 |
Q |
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| T |
2018387 |
agttttatttttgtagggttaatagtgtgcaagggttaattccgtaatctttggacgagac |
2018327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 2005700 - 2005585
Alignment:
| Q |
126 |
tcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggttagtagcaacagcatccctcgtcggaaggaacgacagaatgtgataca |
225 |
Q |
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| T |
2005700 |
tcgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcggaaggcatgacagaatgtgacatc |
2005601 |
T |
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| Q |
226 |
gaacgtcgtcaggtag |
241 |
Q |
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| T |
2005600 |
gaagatcgtcaggtag |
2005585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 2011871 - 2011762
Alignment:
| Q |
129 |
aaggaacggagggagagccagagtggtttccatctctttgacagaaggttagtagcaacagcatccctcgtcggaaggaacgacagaatgtgatacagaa |
228 |
Q |
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| T |
2011871 |
aaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttgtagcagcagcatctctcgttggaaggaatgagagaatgtgacaccgaa |
2011772 |
T |
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| Q |
229 |
cgtcgtcagg |
238 |
Q |
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| T |
2011771 |
catcgtcagg |
2011762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
31 |
gttgttatatactatcatcaatgcctttcttcttg |
65 |
Q |
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| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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