View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19335_high_4 (Length: 384)
Name: NF19335_high_4
Description: NF19335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19335_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Original strand, 7423775 - 7424138
Alignment:
| Q |
20 |
gacatcatcacaatgagatgaaataataaaaagtctatggttaattattcatgtagcacgtgaagcgccccaaaaatgtagtaatttatttaagaccact |
119 |
Q |
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| T |
7423775 |
gacatcataacaatgaaatgagataataaaaagtctatggttaattattcatgtagcacgtgaagcgccccaaaaatgtagtaatttatttaagaccact |
7423874 |
T |
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| Q |
120 |
aataattggttccaataataatataagcagacagaccaaataacaggagtcaaaagtgcacgttctctcatccgtactttacttatacaatccaattcta |
219 |
Q |
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| T |
7423875 |
aataattggttccaataataatataagcagacagaccaaataacaggagtcaaaagtgcacgttctctcatccgtactttac-tatacaatccaattcta |
7423973 |
T |
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| Q |
220 |
ttttgttttaaacttttgatttataggtgaagagaactttggtaatatagagtttcatcgtgagataaatattattcgatcaataactgtttgatatgta |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423974 |
ttttattttaaacttttgatttataggtgaagagaactttggtaatgtagagtttgatcgtgagataaatattattcgatcaataactgtttgatatgta |
7424073 |
T |
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| Q |
320 |
agttaaattcaatttatttttattttaaaccattcattgatagtgaagtttattaacaagctgaa |
384 |
Q |
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| T |
7424074 |
agttaaactcaatttatttttattttaaaccattcattgatagtgaagtttattaaccagctgaa |
7424138 |
T |
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