View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19335_low_2 (Length: 477)
Name: NF19335_low_2
Description: NF19335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19335_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 40048627 - 40049103
Alignment:
| Q |
1 |
aacaggagtagaaagagtgagaaggaaaagataatttgattcatatttggcttgatgattgaagattgtggaggaacgtaaatgattggattttttgtta |
100 |
Q |
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| T |
40048627 |
aacatgagtagaaagagtgagaaggaaaagataatttgattcatatttggcttgatgattgaagattgtggaggaatgtaaatgattggattttttgtta |
40048726 |
T |
|
| Q |
101 |
atttgtatgttggatgtgttgattggagagtaatgagaggtggttttatatagagaccaatgaaatgatgggtaggtgtaatgttatagttctatagttg |
200 |
Q |
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| T |
40048727 |
atttgtatgttggatgtgttgattggatggcaaggagaggtggatttatattgaggccaaggaaatgatgggtaggtgtaatgttatagttctatagttg |
40048826 |
T |
|
| Q |
201 |
tgattttggtggaatcaataatctgtcatggtgaataaggatattttatc------------ttattattattggcattgcatctcttttggttacttga |
288 |
Q |
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| T |
40048827 |
tgattttggtggaatcaataatctgtcatggtgaataaggatattttatcttattattattattattattattggtattgcatctcttttggttacttga |
40048926 |
T |
|
| Q |
289 |
attattgtgtgaagtttttatgtggtgagccgttaactttgaaatgagattaatattattgtttctcaaatcatattgcaataaatgtagttggaatcaa |
388 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048927 |
attatcgtgtgaagtttttatgtggtgacccgttaactttgaaatgagattaatattattgtttctcaaatcatattgcaataaatgtagttggaatcaa |
40049026 |
T |
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| Q |
389 |
cagtatagaggttatagaaaatgtataactgacctgtaagataaacnnnnnnnggacaaaaattggcttgtgatatt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40049027 |
cagtatagaggttatagaaaatgtataactgacctgtaagataaactttttttggacaaaaattggcttgtgatatt |
40049103 |
T |
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