View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_high_13 (Length: 395)
Name: NF19336_high_13
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 6434049 - 6433983
Alignment:
| Q |
16 |
aaaaaagagaataaaagtgcaagcagacactcatgtttgtagacaaagctactcaaacacagaatca |
82 |
Q |
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| T |
6434049 |
aaaaaaaagaatataagtgcaagcagacactcatgtctgtagacaaagctaatcaaacacagaatca |
6433983 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 6433900 - 6433845
Alignment:
| Q |
165 |
agctttcaaaatgatcacaccttcacacaaccactcaaacaacaactgagccaatt |
220 |
Q |
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| T |
6433900 |
agctttcaaaatgattacaccatcacacaaccactcaaactacaattgagccaatt |
6433845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 6433828 - 6433790
Alignment:
| Q |
340 |
cttgaaacgtgaaccctactcaaatctcacagtacctac |
378 |
Q |
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| T |
6433828 |
cttgaaacgtgaaccctactcaaatctcacagtacctac |
6433790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 31652310 - 31652228
Alignment:
| Q |
224 |
tcaatcataaataactctttcctaacctacaaatttatagttcaaaacaactataagccaaataatattcccatctgattcaa |
306 |
Q |
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||||||||| ||||||||| ||||| ||||||||||| ||||||| |||||| |||||||| || |||||||||| |||||| |
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| T |
31652310 |
tcaatcatagataactcttacctaaactacaaatttaaagttcaacacaactctaagccaacaaaaattcccatcttattcaa |
31652228 |
T |
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