View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_high_20 (Length: 323)
Name: NF19336_high_20
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 2448845 - 2448550
Alignment:
| Q |
11 |
taatactggaagactcttgggtgggaaaactgcatgtagatagcttttattccgtccaagcgctgacggcccaagtagtattcctccctgtcatcatcaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448845 |
taatactggaagactcttgggtgggaaaactgcatgtagatagcctttattccgtccaagcgctgacggcccaagtagtattcctccctgtcatcatcaa |
2448746 |
T |
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| Q |
111 |
taagcaatcttaagacacaaaaatagaagttgaaaaaacctcttctctattttagaaggcaattagcaagactgaccaaatgtggatttaatgaagtgcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2448745 |
taagcaatcttaagacacaaaaatagaagttgaaaaaacctcttctctattttagaaggcaattagcaagactggccaaatgtggatttaatgaagtgcc |
2448646 |
T |
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| Q |
211 |
aagtctgtttaaactctctgcgacatagaaagtagttgtgcatatgattcaattttaatttctcttacacatgtgcacattttggcatgtatatat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448645 |
aagtctgtttaaactctctgcgacatagaaagtagttgtgcatatgattcaattttaatttctcttacacatgtgcacattttggcatgtatatat |
2448550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 132 - 304
Target Start/End: Complemental strand, 2459666 - 2459493
Alignment:
| Q |
132 |
aatagaagttgaaaaaa-cctcttctctattttagaaggcaattagcaagactgaccaaatgtggatttaatgaagtgccaagtctgtttaaactctctg |
230 |
Q |
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||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
2459666 |
aatagaagttgaaaaaaacctctgctcttttttagaaggcaattagtgagactgaccaaatgtggatgtaatgaagtgtcaagtctgtttaaactatctg |
2459567 |
T |
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| Q |
231 |
cgacatagaaagtagttgtgcatatgattcaattttaatttctcttacacatgtgcacattttggcatgtatat |
304 |
Q |
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| T |
2459566 |
ctacatagaaagtggttgtgcatataatacaattttaatttctcttacacatgtgcatattttggcctgtatat |
2459493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 2459863 - 2459737
Alignment:
| Q |
11 |
taatactggaagactcttgggtgggaaaactgcatgtagatagcttttattccgtccaagcgctgacggcccaagtagtattcctccctgtcatcatcaa |
110 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2459863 |
taatactggaagactcttggatgggaaaactgctcgtagatagcttttattccgtccaagcgctgacggcccaagtattattcctccctgtcatcatcaa |
2459764 |
T |
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| Q |
111 |
taagcaatctta--agacacaaaaata |
135 |
Q |
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|||| ||||||| ||||||||||||| |
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| T |
2459763 |
taagaaatcttaacagacacaaaaata |
2459737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 2444091 - 2443999
Alignment:
| Q |
11 |
taatactggaagactcttgggtgggaaaactgcatgtagatagcttttattccgtccaagcgctgacggcccaagtagtattcctccctgtca |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
2444091 |
taatactggaagactcttgggtgggaaaactgcatgtagatagcttttattccgtccaaatgctgatggcccaagtagtattcctccctgtca |
2443999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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