View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_high_21 (Length: 309)
Name: NF19336_high_21
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 47203509 - 47203224
Alignment:
| Q |
8 |
cgaagaatatcttaaaagaattgaatattattaatttagaaaatatgggttgggaccaaaagtgctacaaacattttcttttttaaaggaaaagggctac |
107 |
Q |
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| T |
47203509 |
cgaagaatatcttaaaagaattgaatattattaatttagaaaatatgggttgggaccaaaagtgctacaaacattttcttttttaaaggaaaagtgctat |
47203410 |
T |
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| Q |
108 |
aaacattataatggaggaactaaaaaatttaattttaaaatgatggaggactattttcgtaagtgtaatataacggagagat-nnnnnnnntataactaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
47203409 |
aaacattataatggaggaactaaaaaatttaattttaaaatgatggaggactattttcgtaagtgtaatataacagagagataaaaaaaaatataactaa |
47203310 |
T |
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| Q |
207 |
gtttaaaccataaaagtgtctttagcagatttaaggttcaattatgtgcattagagaaattttaaacatag-tttttattgcaaca |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47203309 |
gtttaaaccataaaagtgtctttagcagatttaaggttcaattatgtgcattagagaaattttaaacatagttttttattgcaaca |
47203224 |
T |
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