View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_high_29 (Length: 236)
Name: NF19336_high_29
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 1423285 - 1423425
Alignment:
| Q |
78 |
aatagactgagaatgtgtatttatagtactatgctagtctatgtgaaactcatgtatatcatatatattgtatcttagccttttaattgcttcagatctt |
177 |
Q |
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| T |
1423285 |
aatacactgagaatgtgtatttatagtactatgctagtctatgtgaaactcatgcatatcatatatattgtatcttagccttttaattgcttcagatctt |
1423384 |
T |
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| Q |
178 |
cacctaaattttcttttaacactcttgcaaatgaaaaagag |
218 |
Q |
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| T |
1423385 |
cacctaaattttcttttaacactcttgcaaatgaaagagag |
1423425 |
T |
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Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 1416457 - 1416645
Alignment:
| Q |
14 |
caagaagaagtgaagaaactccatgaaagaagtgaaaggttaaggtgtattgaatgaatgtaaaaatagactgagaatgtgtatttatagtactatgcta |
113 |
Q |
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| T |
1416457 |
caagaaaaagtgaagaaactccacgaaagaagtaaaaggttatggtgtattgaatgaatgtaaacatacacagaaaatgtgtatttatagtactacgcta |
1416556 |
T |
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| Q |
114 |
gtctatgtgaaactcatgtatatcatatatattgtatcttagcct---tttaattgcttcag----atcttcacctaaattttcttttaa |
196 |
Q |
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| T |
1416557 |
gtctatgtgaacctcatgcatatcatatgtattgtatct-agcctaattctaattgcttcagttttatcttcacctaaattttcttttaa |
1416645 |
T |
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