View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19336_high_5 (Length: 540)

Name: NF19336_high_5
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19336_high_5
NF19336_high_5
[»] chr6 (17 HSPs)
chr6 (18-377)||(5142534-5142895)
chr6 (481-525)||(23925334-23925378)
chr6 (481-525)||(30824551-30824595)
chr6 (482-525)||(5004061-5004104)
chr6 (482-525)||(5489141-5489184)
chr6 (482-525)||(5994699-5994742)
chr6 (482-525)||(25550295-25550338)
chr6 (482-525)||(33298085-33298128)
chr6 (482-525)||(35091698-35091741)
chr6 (480-525)||(25506563-25506608)
chr6 (481-525)||(11279836-11279880)
chr6 (482-525)||(13825703-13825746)
chr6 (482-525)||(15391633-15391676)
chr6 (482-515)||(13490193-13490226)
chr6 (484-525)||(25991852-25991893)
chr6 (482-515)||(11053702-11053735)
chr6 (388-472)||(3674040-3674124)
[»] chr5 (17 HSPs)
chr5 (481-525)||(29186300-29186344)
chr5 (388-457)||(32161799-32161868)
chr5 (482-525)||(24956868-24956911)
chr5 (482-525)||(24965331-24965374)
chr5 (481-525)||(19223554-19223598)
chr5 (482-522)||(20372938-20372978)
chr5 (482-522)||(20398660-20398700)
chr5 (481-525)||(31421788-31421832)
chr5 (482-525)||(1728181-1728224)
chr5 (482-525)||(28843940-28843983)
chr5 (482-525)||(28852550-28852593)
chr5 (482-525)||(43598068-43598111)
chr5 (482-525)||(43603560-43603603)
chr5 (482-525)||(43609052-43609095)
chr5 (481-525)||(31410889-31410933)
chr5 (482-525)||(23350098-23350141)
chr5 (480-509)||(29188491-29188520)
[»] scaffold0111 (1 HSPs)
scaffold0111 (480-525)||(33033-33078)
[»] chr4 (9 HSPs)
chr4 (480-525)||(8103110-8103155)
chr4 (481-525)||(21532326-21532370)
chr4 (482-525)||(8094304-8094347)
chr4 (482-525)||(12996476-12996519)
chr4 (482-525)||(52295604-52295647)
chr4 (481-525)||(10638327-10638371)
chr4 (481-525)||(27343713-27343757)
chr4 (481-515)||(12428510-12428544)
chr4 (482-525)||(4523702-4523745)
[»] scaffold0497 (1 HSPs)
scaffold0497 (481-525)||(10992-11036)
[»] scaffold0002 (1 HSPs)
scaffold0002 (481-525)||(121227-121271)
[»] chr8 (11 HSPs)
chr8 (481-525)||(17683818-17683862)
chr8 (481-525)||(17973564-17973608)
chr8 (481-525)||(26876076-26876120)
chr8 (481-525)||(30938281-30938325)
chr8 (482-525)||(17664662-17664705)
chr8 (482-525)||(26873626-26873669)
chr8 (481-525)||(1407095-1407139)
chr8 (482-525)||(39837584-39837627)
chr8 (482-525)||(39845627-39845670)
chr8 (482-522)||(4839807-4839847)
chr8 (481-525)||(25579834-25579878)
[»] chr7 (8 HSPs)
chr7 (481-525)||(12978454-12978498)
chr7 (482-525)||(4941599-4941642)
chr7 (482-525)||(18304414-18304457)
chr7 (482-525)||(10439937-10439980)
chr7 (482-525)||(4952419-4952462)
chr7 (482-525)||(13831500-13831543)
chr7 (482-525)||(13839531-13839574)
chr7 (481-515)||(30244774-30244808)
[»] chr2 (22 HSPs)
chr2 (481-525)||(14582924-14582968)
chr2 (481-525)||(15953094-15953138)
chr2 (482-525)||(15944579-15944622)
chr2 (482-525)||(17687420-17687463)
chr2 (482-525)||(20372335-20372378)
chr2 (482-525)||(20621518-20621561)
chr2 (482-525)||(35138593-35138636)
chr2 (482-525)||(35146929-35146972)
chr2 (482-525)||(41233866-41233909)
chr2 (481-525)||(25483600-25483644)
chr2 (481-525)||(25491206-25491250)
chr2 (481-525)||(38168379-38168423)
chr2 (481-525)||(44372704-44372748)
chr2 (481-525)||(44388615-44388659)
chr2 (482-525)||(42565951-42565994)
chr2 (482-525)||(42574575-42574618)
chr2 (481-515)||(42249487-42249521)
chr2 (482-511)||(24285696-24285725)
chr2 (482-511)||(24292372-24292401)
chr2 (478-515)||(26903365-26903402)
chr2 (482-515)||(34070636-34070669)
chr2 (481-509)||(21322848-21322876)
[»] chr1 (11 HSPs)
chr1 (481-525)||(35104086-35104130)
chr1 (482-525)||(31539954-31539997)
chr1 (482-525)||(31548523-31548566)
chr1 (482-525)||(3432912-3432955)
chr1 (482-515)||(21498930-21498963)
chr1 (482-525)||(29221510-29221553)
chr1 (478-525)||(32137776-32137823)
chr1 (481-512)||(44320227-44320258)
chr1 (481-515)||(20314059-20314093)
chr1 (481-509)||(22646705-22646733)
chr1 (484-512)||(28457556-28457584)
[»] scaffold0156 (1 HSPs)
scaffold0156 (482-525)||(35378-35421)
[»] scaffold0048 (1 HSPs)
scaffold0048 (482-525)||(7651-7694)
[»] scaffold0039 (1 HSPs)
scaffold0039 (478-525)||(40855-40902)
[»] scaffold0016 (1 HSPs)
scaffold0016 (482-525)||(23464-23507)
[»] chr3 (19 HSPs)
chr3 (482-525)||(17628265-17628308)
chr3 (482-525)||(28470239-28470282)
chr3 (482-525)||(50824352-50824395)
chr3 (482-525)||(50851465-50851508)
chr3 (482-525)||(8154666-8154709)
chr3 (482-525)||(9525456-9525499)
chr3 (482-525)||(9555130-9555173)
chr3 (482-525)||(14538627-14538670)
chr3 (482-525)||(27341357-27341400)
chr3 (482-525)||(41006556-41006599)
chr3 (482-525)||(41015336-41015379)
chr3 (481-515)||(30508-30542)
chr3 (482-515)||(8197728-8197761)
chr3 (482-515)||(17919199-17919232)
chr3 (482-522)||(2211239-2211279)
chr3 (482-525)||(17933655-17933698)
chr3 (481-512)||(18039010-18039041)
chr3 (332-377)||(9668699-9668744)
chr3 (481-509)||(21186746-21186774)
[»] scaffold0209 (1 HSPs)
scaffold0209 (481-525)||(106-150)
[»] scaffold0083 (1 HSPs)
scaffold0083 (481-525)||(15812-15856)
[»] scaffold1487 (1 HSPs)
scaffold1487 (480-525)||(765-811)
[»] scaffold0431 (1 HSPs)
scaffold0431 (481-515)||(138-172)
[»] scaffold0991 (1 HSPs)
scaffold0991 (482-515)||(405-438)
[»] scaffold0015 (1 HSPs)
scaffold0015 (482-515)||(192528-192561)
[»] scaffold0632 (1 HSPs)
scaffold0632 (478-525)||(4386-4433)
[»] scaffold0173 (1 HSPs)
scaffold0173 (482-525)||(951-994)
[»] scaffold0027 (1 HSPs)
scaffold0027 (482-517)||(65708-65743)
[»] scaffold0863 (1 HSPs)
scaffold0863 (482-511)||(408-437)
[»] scaffold0222 (1 HSPs)
scaffold0222 (482-511)||(20518-20547)
[»] scaffold0044 (1 HSPs)
scaffold0044 (482-515)||(81818-81851)
[»] scaffold0391 (1 HSPs)
scaffold0391 (480-508)||(2-30)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 5142534 - 5142895
Alignment:
Q  18 ttcttcggtgtctttttctatgttgctcaatggtagcccgtgtcaaaatttctctccaaagcgtggtttacgccaaggggaccccttatcacctatttg- 116  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||     
T  5142534 ttcttcggtttctttttctatgctgctcaatggtagcccgtgtcaaaatttctctccaaagagtggtttacgtcaaggggaccccttatcacctatttgt 5142633  T
Q  117 ttaatatttgtgcagaggtgttttcaagccttctcaccagagcccaagatgaaaatgttttacatggattgaaaatagctagaggagcgccaagtattac 216  Q
    ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5142634 ttattatttgtgcagaggtgtttttaag-cttctcaccagagcccaagatgaaaatgttttacatggattgaaaatagctagaggagcaccaagtattac 5142732  T
Q  217 ccatctc--nnnnnnngctgatgatagccttattttatgtagggattgccatcagaatgctcaaaatgttaatgaggtacttaagctataccagacaatt 314  Q
    |||||||         |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5142733 ccatctcttttttttagctgatgatagccttattttatgtagggattgccattagaatgctcaaaatattaatgaggtacttaagctataccaaacaatt 5142832  T
Q  315 actggcaaactcattaatttggataagttggaaatttcttttagccgaaatgttcttgaagag 377  Q
     ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  5142833 tctgccaaactcattaatctggataagtcggaaatttcttttagccgaaatgttcttgaagag 5142895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 23925334 - 23925378
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  23925334 ttgtcataccccaaattttgaccacttttctctattcttacccat 23925378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 30824595 - 30824551
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  30824595 ttgtcataccccaaattttgaccacttttctctattcttacccat 30824551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 5004061 - 5004104
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccat 5004104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 5489184 - 5489141
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccat 5489141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 5994699 - 5994742
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccat 5994742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 25550295 - 25550338
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccat 25550338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 33298085 - 33298128
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccat 33298128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 35091741 - 35091698
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccat 35091698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 25506608 - 25506563
Alignment:
Q  480 tttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  25506608 tttgtcataccccaaattttgatcacttttctctattcttacccat 25506563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 11279836 - 11279880
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  11279836 ttgtcataccccaaattttgaccactttcctctattcttacccat 11279880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 13825703 - 13825746
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccat 13825746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 15391676 - 15391633
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccat 15391633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 13490193 - 13490226
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctat 13490226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 25991852 - 25991893
Alignment:
Q  484 tcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccat 25991893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 11053702 - 11053735
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||||||||||| |||||    
T  11053702 tgtcataccccaaattttgaccacttttttctat 11053735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 3674124 - 3674040
Alignment:
Q  388 tgttccaaagttgaatgcaaattaaggccgttgaatgtcatttgaaatatttgggtttaccaacttttgttggtcgttcaaaaca 472  Q
    |||| |||||||| |||||||||||||   | || ||||||| |||||| ||||||||||||  |||||| || || ||||||||    
T  3674124 tgttgcaaagttggatgcaaattaaggttctggagtgtcattcgaaatacttgggtttaccagtttttgtggggcgatcaaaaca 3674040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 29186344 - 29186300
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29186344 ttgtcataccccaaattttgaccacttttctctatccttacccat 29186300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 457
Target Start/End: Complemental strand, 32161868 - 32161799
Alignment:
Q  388 tgttccaaagttgaatgcaaattaaggccgttgaatgtcatttgaaatatttgggtttaccaacttttgt 457  Q
    ||||||||||||| ||||||||||||| ||| || ||||||| |||||| |||||||||||| |||||||    
T  32161868 tgttccaaagttggatgcaaattaaggtcgtggagtgtcattcgaaatacttgggtttaccagcttttgt 32161799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 24956911 - 24956868
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccat 24956868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 24965374 - 24965331
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccat 24965331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 19223554 - 19223598
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  19223554 ttgtcataccccaaattttgaccacttttctctattcttatccat 19223598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 20372978 - 20372938
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacc 522  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  20372978 tgtcataccccaaattttgaccacttttctctattcttacc 20372938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 20398700 - 20398660
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacc 522  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  20398700 tgtcataccccaaattttgaccacttttctctattcttacc 20398660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 31421788 - 31421832
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  31421788 ttgtcatacccaaaattttgaccacttttctctattcttacccat 31421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 1728224 - 1728181
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccat 1728181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 28843940 - 28843983
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccat 28843983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 28852550 - 28852593
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccat 28852593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 43598111 - 43598068
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccat 43598068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 43603603 - 43603560
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccat 43603560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 43609095 - 43609052
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccat 43609052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 31410889 - 31410933
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||    
T  31410889 ttgtcataccccaaattttgaccacatttctctattctaacccat 31410933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 23350141 - 23350098
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||    
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccat 23350098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 509
Target Start/End: Original strand, 29188491 - 29188520
Alignment:
Q  480 tttgtcataccccaaattttgaccactttt 509  Q
    ||||||||||||||||||||||||||||||    
T  29188491 tttgtcataccccaaattttgaccactttt 29188520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 525
Target Start/End: Original strand, 33033 - 33078
Alignment:
Q  480 tttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  33033 tttgtcataccccaaattttgaccacttttctctattcttacccat 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 8103155 - 8103110
Alignment:
Q  480 tttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  8103155 tttgtcataccccaaattttgaccacttttctctattcttacccat 8103110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 21532370 - 21532326
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  21532370 ttgtcataccccaaattttgaccacttttctctatccttatccat 21532326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 8094347 - 8094304
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccat 8094304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 12996476 - 12996519
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccat 12996519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 52295604 - 52295647
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccat 52295647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 10638327 - 10638371
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  10638327 ttgtcataccccaaattttgaccacttttctctatttttacccat 10638371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 27343757 - 27343713
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  27343757 ttgtcataccccaaattttgaccacttttctctatttttacccat 27343713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 12428544 - 12428510
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||||||||||||||||||    
T  12428544 ttgtcataccccaaattttgaccacttttctctat 12428510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 4523745 - 4523702
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||    
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccat 4523702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 10992 - 11036
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  10992 ttgtcataccccaaattttgaccacttttctctattcttacccat 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 121227 - 121271
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  121227 ttgtcataccccaaattttgaccacttttctctattcttacccat 121271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 17683862 - 17683818
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  17683862 ttgtcataccccaaattttgaccacttttctctatccttgcccat 17683818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 17973564 - 17973608
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  17973564 ttgtcataccccaaattttgaccacttttctctattcttacccat 17973608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 26876120 - 26876076
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  26876120 ttgtcataccccaaattttgaccacttttctctattcttacccat 26876076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 30938281 - 30938325
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  30938281 ttgtcataccccaaattttgaccacttttctctattcttacccat 30938325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 17664705 - 17664662
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccat 17664662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 26873669 - 26873626
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccat 26873626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 1407139 - 1407095
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  1407139 ttgtcataccccaaattttgaccactttcctctattcttacccat 1407095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 39837627 - 39837584
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccat 39837584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 39845670 - 39845627
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccat 39845627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 4839847 - 4839807
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacc 522  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacc 4839807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 25579878 - 25579834
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||    
T  25579878 ttgtcataccctaaattttgaccacttttatctattcttacccat 25579834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 12978454 - 12978498
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  12978454 ttgtcataccccaaattttgaccacttttctctattcttacccat 12978498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 4941642 - 4941599
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccat 4941599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 18304457 - 18304414
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccat 18304414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 10439937 - 10439980
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccat 10439980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 4952462 - 4952419
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||    
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccat 4952419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 13831500 - 13831543
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||| |||||||||||||||| |||||| |||||||||    
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccat 13831543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 13839531 - 13839574
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||    
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccat 13839574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 515
Target Start/End: Original strand, 30244774 - 30244808
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||| ||||||||||||||||||||||||    
T  30244774 ttgtcatacctcaaattttgaccacttttctctat 30244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 14582924 - 14582968
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  14582924 ttgtcataccccaaattttgaccacttttctctattcttacccat 14582968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 15953138 - 15953094
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  15953138 ttgtcataccccaaattttgaccacttttctctattcttacccat 15953094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 15944622 - 15944579
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccat 15944579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 17687463 - 17687420
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccat 17687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 20372378 - 20372335
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccat 20372335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 20621518 - 20621561
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccat 20621561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 35138593 - 35138636
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccat 35138636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 35146929 - 35146972
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccat 35146972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 41233909 - 41233866
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccat 41233866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 25483600 - 25483644
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  25483600 ttgtcataccccaaattttgaccacttttctctattcttatccat 25483644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 25491206 - 25491250
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  25491206 ttgtcataccccaaattttgaccacttttctctattcttatccat 25491250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 38168423 - 38168379
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  38168423 ttgtcatactccaaattttgaccacttttctctattcttacccat 38168379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 44372704 - 44372748
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  44372704 ttgtcataccccaaattttgaccacttttttctatctttacccat 44372748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 44388615 - 44388659
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  44388615 ttgtcataccccaaattttgaccacttttttctatctttacccat 44388659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 42565994 - 42565951
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccat 42565951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 42574618 - 42574575
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccat 42574575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 42249521 - 42249487
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||||||||||||||||||    
T  42249521 ttgtcataccccaaattttgaccacttttctctat 42249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Original strand, 24285696 - 24285725
Alignment:
Q  482 tgtcataccccaaattttgaccacttttct 511  Q
    ||||||||||||||||||||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttct 24285725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Original strand, 24292372 - 24292401
Alignment:
Q  482 tgtcataccccaaattttgaccacttttct 511  Q
    ||||||||||||||||||||||||||||||    
T  24292372 tgtcataccccaaattttgaccacttttct 24292401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 26903402 - 26903365
Alignment:
Q  478 tatttgtcataccccaaattttgaccacttttctctat 515  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  26903402 tatttatcataccctaaattttgaccacttttctctat 26903365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 34070669 - 34070636
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||| |||||||||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctat 34070636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 21322876 - 21322848
Alignment:
Q  481 ttgtcataccccaaattttgaccactttt 509  Q
    |||||||||||||||||||||||||||||    
T  21322876 ttgtcataccccaaattttgaccactttt 21322848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 35104130 - 35104086
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  35104130 ttgtcataccccaaattttgaccacttttctctattcttacccat 35104086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 31539954 - 31539997
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccat 31539997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 31548523 - 31548566
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccat 31548566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 3432955 - 3432912
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccat 3432912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 21498963 - 21498930
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctat 21498930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 29221553 - 29221510
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||    
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccat 29221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 32137823 - 32137776
Alignment:
Q  478 tatttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||| ||||||||||||||| ||||||||||||| |||| ||||    
T  32137823 tatttgtcttaccccaaattttgatcacttttctctattcttatccat 32137776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 512
Target Start/End: Complemental strand, 44320258 - 44320227
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctc 512  Q
    ||||||||||||||||||||||||||||||||    
T  44320258 ttgtcataccccaaattttgaccacttttctc 44320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 20314093 - 20314059
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||| |||||    
T  20314093 ttgtcataccccaaattttgaccacttttttctat 20314059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 22646705 - 22646733
Alignment:
Q  481 ttgtcataccccaaattttgaccactttt 509  Q
    |||||||||||||||||||||||||||||    
T  22646705 ttgtcataccccaaattttgaccactttt 22646733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 512
Target Start/End: Original strand, 28457556 - 28457584
Alignment:
Q  484 tcataccccaaattttgaccacttttctc 512  Q
    |||||||||||||||||||||||||||||    
T  28457556 tcataccccaaattttgaccacttttctc 28457584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 35421 - 35378
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccat 35378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 7694 - 7651
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccat 7651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 40902 - 40855
Alignment:
Q  478 tatttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  40902 tatttgtcataccccaaattttgaccacttttctctattcttatccat 40855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 23464 - 23507
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccat 23507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 17628265 - 17628308
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccat 17628308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 28470282 - 28470239
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccat 28470239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 50824352 - 50824395
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccat 50824395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 50851508 - 50851465
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccat 50851465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 8154709 - 8154666
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccat 8154666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 9525499 - 9525456
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccat 9525456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 9555173 - 9555130
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccat 9555130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 14538670 - 14538627
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccat 14538627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 27341400 - 27341357
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccat 27341357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 41006556 - 41006599
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccat 41006599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 41015336 - 41015379
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccat 41015379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 515
Target Start/End: Complemental strand, 30542 - 30508
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||||||||||||||||||    
T  30542 ttgtcataccccaaattttgaccacttttctctat 30508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 8197761 - 8197728
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctat 8197728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 17919199 - 17919232
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  17919199 tgtcataccccaaattttgaccacttttctctat 17919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 2211239 - 2211279
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacc 522  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacc 2211279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 17933655 - 17933698
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||    
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccat 17933698  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 512
Target Start/End: Original strand, 18039010 - 18039041
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctc 512  Q
    ||||||||||||||||||||||||||||||||    
T  18039010 ttgtcataccccaaattttgaccacttttctc 18039041  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 9668744 - 9668699
Alignment:
Q  332 tttggataagttggaaatttcttttagccgaaatgttcttgaagag 377  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||||||    
T  9668744 tttggacaagtcggaaatttcctttagccgaaatgtttttgaagag 9668699  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 21186746 - 21186774
Alignment:
Q  481 ttgtcataccccaaattttgaccactttt 509  Q
    |||||||||||||||||||||||||||||    
T  21186746 ttgtcataccccaaattttgaccactttt 21186774  T

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Target: scaffold0209 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 150 - 106
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  150 ttgtcataccccaaattttgaccactttcctctattcttacccat 106  T

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Target: scaffold0083 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 525
Target Start/End: Original strand, 15812 - 15856
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  15812 ttgtcataccccaaattttgaccacttttctctatttttacccat 15856  T

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Target: scaffold1487 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 811 - 765
Alignment:
Q  480 tttgtcatacccc-aaattttgaccacttttctctatccttacccat 525  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  811 tttgtcatacccccaaattttgaccacttttctctattcttacccat 765  T

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Target: scaffold0431 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 515
Target Start/End: Original strand, 138 - 172
Alignment:
Q  481 ttgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||||||||||||||||||||||||||||    
T  138 ttgtcataccccaaattttgaccacttttctctat 172  T

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Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 438 - 405
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctat 405  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 192528 - 192561
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    ||||||||||||||||||||||||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctat 192561  T

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Target: scaffold0632 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 4386 - 4433
Alignment:
Q  478 tatttgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||    
T  4386 tatttgtcataccccaaattttgacattttttctctattcttacccat 4433  T

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Target: scaffold0173 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 994 - 951
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatccttacccat 525  Q
    |||||||||||||||||||||||  ||||||||| |||||||||    
T  994 tgtcataccccaaattttgaccagctttctctattcttacccat 951  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Complemental strand, 65743 - 65708
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctatcc 517  Q
    |||||||||| |||||||||||||||||||||||||    
T  65743 tgtcataccctaaattttgaccacttttctctatcc 65708  T

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Target: scaffold0863 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Complemental strand, 437 - 408
Alignment:
Q  482 tgtcataccccaaattttgaccacttttct 511  Q
    ||||||||||||||||||||||||||||||    
T  437 tgtcataccccaaattttgaccacttttct 408  T

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Target: scaffold0222 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 511
Target Start/End: Complemental strand, 20547 - 20518
Alignment:
Q  482 tgtcataccccaaattttgaccacttttct 511  Q
    ||||||||||||||||||||||||||||||    
T  20547 tgtcataccccaaattttgaccacttttct 20518  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 81851 - 81818
Alignment:
Q  482 tgtcataccccaaattttgaccacttttctctat 515  Q
    |||||||||| |||||||||||||||||||||||    
T  81851 tgtcataccctaaattttgaccacttttctctat 81818  T

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Target: scaffold0391 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 508
Target Start/End: Complemental strand, 30 - 2
Alignment:
Q  480 tttgtcataccccaaattttgaccacttt 508  Q
    |||||||||||||||||||||||||||||    
T  30 tttgtcataccccaaattttgaccacttt 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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