View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19336_high_7 (Length: 533)

Name: NF19336_high_7
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19336_high_7
NF19336_high_7
[»] chr3 (1 HSPs)
chr3 (121-344)||(37602064-37602284)
[»] chr1 (1 HSPs)
chr1 (121-344)||(46558707-46558927)
[»] chr5 (2 HSPs)
chr5 (245-348)||(22778625-22778728)
chr5 (121-193)||(22778747-22778820)
[»] chr8 (1 HSPs)
chr8 (400-519)||(17931981-17932100)
[»] chr6 (1 HSPs)
chr6 (400-487)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (406-494)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (406-494)||(1849-1937)
[»] chr4 (2 HSPs)
chr4 (434-494)||(11012773-11012833)
chr4 (412-503)||(12189863-12189954)
[»] scaffold0352 (1 HSPs)
scaffold0352 (7-46)||(16829-16868)
[»] chr7 (2 HSPs)
chr7 (406-494)||(5760706-5760794)
chr7 (16-44)||(27846676-27846704)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 121 - 344
Target Start/End: Complemental strand, 37602284 - 37602064
Alignment:
Q  121 ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc 220  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  37602284 ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc 37602187  T
Q  221 caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct 320  Q
    ||||  |||||||||||||| ||  |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  37602186 caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct 37602088  T
Q  321 actcatttacatctatttcaataa 344  Q
    | |||||||||||||||| |||||    
T  37602087 attcatttacatctatttgaataa 37602064  T

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Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 121 - 344
Target Start/End: Original strand, 46558707 - 46558927
Alignment:
Q  121 ctgaaaaagatttgatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagtacaatttgcagatttgtagaaaaagctc 220  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  46558707 ctgaaaaagatttgatcacttgatggcatgacaatagtcacgtaaccataggccatgcattagatttgaagtacaatttgcagatttgt--aaaaagctc 46558804  T
Q  221 caattggacacgttacatttagattgtaaagtagtgggtttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcct 320  Q
    ||||  |||||||||||||| ||  |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  46558805 caatatgacacgttacatttggaccgtaaagtagtggatttgat-gcattactcatgtgtagaacttgcagccatattttgatggtagtagctgatgcct 46558903  T
Q  321 actcatttacatctatttcaataa 344  Q
    | |||||||||||||||| |||||    
T  46558904 attcatttacatctatttgaataa 46558927  T

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Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 22778728 - 22778625
Alignment:
Q  245 tgtaaagtagtggg-tttgatggcattattcatgtgtagaacttgcagccatattttaatggtagtagctgatgcctactcatttacatctatttcaata 343  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||  ||||| ||||||||| |||||||||||||||| ||||    
T  22778728 tgtaaagtagtggggtttgatg-cattattcacgtgtagaacttgcagccatattttgatgtaagtagttgatgcctattcatttacatctatttgaata 22778630  T
Q  344 atgtg 348  Q
    |||||    
T  22778629 atgtg 22778625  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 22778820 - 22778747
Alignment:
Q  121 ctgaaaaagattt-gatcacttgatggcatgataatagtcacataaccataggccatgcattggatttgaagta 193  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||    
T  22778820 ctgaaaaagattttgatcacttgatggcatgacgatagtcacatagccataggccatgcatttgatttgaagta 22778747  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 519
Target Start/End: Original strand, 17931981 - 17932100
Alignment:
Q  400 aagtggagacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagataaagc 499  Q
    |||||||| |||||||||||||| ||| | ||| |||| ||||||||||| |||||| || |||||||||||| |||||| |||||||| |||||  |||    
T  17931981 aagtggaggcctaaggttacaaccattcacgaagcaaaggacttgaacaatcttagcctgaagaatctgataacctctctgaagagtcaagagatggagc 17932080  T
Q  500 ttataggtgatgaacctgat 519  Q
    | |||| | |||||||||||    
T  17932081 taatagtttatgaacctgat 17932100  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 487
Target Start/End: Original strand, 23602332 - 23602419
Alignment:
Q  400 aagtggagacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtc 487  Q
    |||||||| || ||||||||| |||| |||||| ||||| |||| ||||  |||||| ||||||| |||||||||||||| |||||||    
T  23602332 aagtggagcccaaaggttacatctatataggaagcaaaatacttaaacagacttagcttggagaacctgataagctctctgaagagtc 23602419  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 1906 - 1818
Alignment:
Q  406 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 494  Q
    ||||| ||||||||||| ||| ||||| |||| ||| |||||||||| ||| |||| ||||||||||| ||||| || || ||||||||    
T  1906 agaccaaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagat 1818  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 1937 - 1849
Alignment:
Q  406 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 494  Q
    ||||| ||||||||||| ||| ||||| |||| ||| |||||||||| ||| |||| ||||||||||| ||||| || || ||||||||    
T  1937 agaccaaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagat 1849  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 494
Target Start/End: Original strand, 11012773 - 11012833
Alignment:
Q  434 caaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 494  Q
    ||||||| |||||||||||| |  |||||| |||||||||||||||| |||||||||||||    
T  11012773 caaaagaattgaacaagcttggattggagactctgataagctctctagagagtcatgagat 11012833  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 12189954 - 12189863
Alignment:
Q  412 aaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagataaagcttat 503  Q
    ||||||||||| ||| ||||| |||| || ||||||||||| ||| || ||||||||||||| ||||| || | ||||| |||| |||||||    
T  12189954 aaggttacaaccattcaggaagcaaaggatttgaacaagctaagcctgaagaatctgataagttctctcaaaattcatgtgatatagcttat 12189863  T

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Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16829 - 16868
Alignment:
Q  7 gtgtaatgtccgtttcgaattatttaattgagtctagaag 46  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  16829 gtgtaacgcccgtttcgaattatttaattgagtctagaag 16868  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 5760794 - 5760706
Alignment:
Q  406 agacctaaggttacaactatttaggaaacaaaagacttgaacaagcttagcatggagaatctgataagctctctaaagagtcatgagat 494  Q
    ||||| |||| |||||||||| ||||| |||| || ||||| ||| | ||| |||| | ||| || |||||||| ||||||||||||||    
T  5760794 agaccaaaggctacaactattcaggaagcaaaggaattgaataaggtaagcttggaaagtctcattagctctctcaagagtcatgagat 5760706  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 27846676 - 27846704
Alignment:
Q  16 ccgtttcgaattatttaattgagtctaga 44  Q
    |||||||||||||||||||||||||||||    
T  27846676 ccgtttcgaattatttaattgagtctaga 27846704  T

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