View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_12 (Length: 400)
Name: NF19336_low_12
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 598548 - 598946
Alignment:
| Q |
1 |
agaaaactgaaacttatgcggatagctgcatctactttgctgcaatcaaagtgttcaaattgcaatggtatg-------------caacataactaaaaa |
87 |
Q |
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| T |
598548 |
agaaaactgaaacttatgcggatagctgcatctactttgctgcaatcaaagtgttcaaattgcaacggtatgcaacataactatgcaacataactaaaaa |
598647 |
T |
|
| Q |
88 |
tgcacaaaaattgtctgatataccagaagtaatggacttgtatcgtttaaaatatgttttaattgtgtttcatatgattcttggttggtagcttcatagt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
598648 |
tgcacaaaaattgtctgatataccagaagtaatggacttgtatcgtttaaaatatgttttaattgtgtttcatatgattcttgattggtagcttcatagt |
598747 |
T |
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| Q |
188 |
ttaacaacaggactaatggacaacatgtgtgtacgcgtagagattcttggacagagaataatgatgggggtttgggagttttcagtgaaggaaaggaacg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
598748 |
ttaacaacaggactaatggacaacatgtgtgtacgcgtagagattcttggacagagaataatgatgggggtttgggagttttcggtgaaggaaaggaacg |
598847 |
T |
|
| Q |
288 |
tgagggatactctgttaccaacattgagttttcttaagttgggaaattttgaagaaattaattgagccacttttacatcaatatttctatctcaaacct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
598848 |
tgagggatactctgttaccaacattgagttttcttaagttgggaaattttgaagaaattaattgagccacttttacatcaatatttctatctcaaacct |
598946 |
T |
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