View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_15 (Length: 368)
Name: NF19336_low_15
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 3424852 - 3425204
Alignment:
| Q |
1 |
ttggagggctttccaatttgcatttagagtttatacatttgctggtggacgtgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaa |
100 |
Q |
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| T |
3424852 |
ttggagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaa |
3424951 |
T |
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| Q |
101 |
agtgaccctcatcaaccatagctatgcattgatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatat |
200 |
Q |
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| T |
3424952 |
agtgaccctaatcaaccatagctattcattgatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatat |
3425051 |
T |
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| Q |
201 |
tgacattgactgagatacctaaagtcgagannnnnnnnnnnnnnnnatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaa |
300 |
Q |
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| T |
3425052 |
tgacaagtgctgagatacctaaagtcgagattttattttttgttttatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaa |
3425151 |
T |
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| Q |
301 |
ccatgtgctcaaccaacctgtaaattcttatgatgtgatggattattacatct |
353 |
Q |
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| T |
3425152 |
ccatgtgctcaaccaacctgtaaattcttatgatgtgatggattattacatct |
3425204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 11916569 - 11916422
Alignment:
| Q |
1 |
ttggagggctttccaatttgcatttagagtttatacatttgctggtggacgtgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaa |
100 |
Q |
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| T |
11916569 |
ttggagggctttccaatttgcatttagggtttatacatttgctggtggacatgatgatcgtgctgacaaactcataagagaattggctaaggaaattgaa |
11916470 |
T |
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| Q |
101 |
agtgaccctcatcaaccatagctatgcattgatcttcttccacaatgat |
149 |
Q |
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| T |
11916469 |
agtgaccctaatcaaccatggctatgttttgatctt-ttctacaatgat |
11916422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 6607320 - 6607363
Alignment:
| Q |
297 |
gaaaccatgtgctcaaccaacctgtaaattcttatgatgtgatg |
340 |
Q |
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| T |
6607320 |
gaaaccatgtgctcaaccaacatataaattcttatgatgtgatg |
6607363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 35742227 - 35742140
Alignment:
| Q |
2 |
tggagggctttccaatttgcatttagagtttatacatttgctggtggacgtgatgatcgtgctgacaaactcacaagagaattggcta |
89 |
Q |
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| T |
35742227 |
tggagggcgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaattggcta |
35742140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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