View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_16 (Length: 363)
Name: NF19336_low_16
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 53794246 - 53794003
Alignment:
| Q |
12 |
atgaatcaccatcatcctcagagagagcaagtttaagcacaccccttgaaattgtattatatgcaatcaatagacgaccatctttaagcttaatcccatc |
111 |
Q |
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| T |
53794246 |
atgaatcaccatcatcctcagagagagcaagtttaagcacaccccttgaaattgtattatatgcaatcaatagacgaccatctttaagcttaatcccatc |
53794147 |
T |
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| Q |
112 |
aatacctaatacaataaaaggaaatttatattataagctattaatgcaagtcggtccagtagcaacaacgacgaatcaccctcttatatatttttcattt |
211 |
Q |
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| T |
53794146 |
aatacctaatacaataaaaggaaatttatattataagctattaatgcaagtcggtccagtagcaacaacgacgaatcaccctcttatatatctttcattt |
53794047 |
T |
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| Q |
212 |
aggtcatttttagttaacgtgggactaactacgtctgacaccaa |
255 |
Q |
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| T |
53794046 |
aggtcatttttagttaacgtgggactaactacgtctgacaccaa |
53794003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 53793968 - 53793901
Alignment:
| Q |
280 |
tcttgtaaatcacatgtctcttatatatgactcgtttagtcaattcttagtcgatgtaagactgactatt |
349 |
Q |
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| T |
53793968 |
tcttgtaaatcac--gtctcttatatatgactcgtttagtcaattcttagtcgatgtaagactgactatt |
53793901 |
T |
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