View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19336_low_19 (Length: 329)
Name: NF19336_low_19
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 5146067 - 5145757
Alignment:
| Q |
1 |
atagaatttcttgctttaatatccttcaaagttggaataacataccacaaaatacaagtgaaaattattgcagctgttcttccaaacacagtcaacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5146067 |
atagaatttcttgctttaatatccttcaaagttggaatcacataccacaaaatacaagtgaaaattattgcagctgttcttccaaacacagtcaacaaaa |
5145968 |
T |
|
| Q |
101 |
ccaaaatcattatcacaacaaatggcaaatagaacaatggtttctccatctcaatattcttcatattccatgagattctcttcttgggttggtttctttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5145967 |
ccaaaatcattatcacaacaaatggcaaatagaataatggtttctccatttcattattcttcatattccatgagattctcttcttgggttggtttctttc |
5145868 |
T |
|
| Q |
201 |
ttccataccaacaattgaggattcaggtgaagactttttctccgttgacttaggactcaagtttcttggtttcactacttttaactcttggctcttgttt |
300 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5145867 |
ttccatagcaacaattgatgattcaggtgaagactttttcaccgttgacttaggactcaagtttcttggtttcactacttttaactcttggctcttgttt |
5145768 |
T |
|
| Q |
301 |
ttcaccttaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
5145767 |
ttcaccttaac |
5145757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University