View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_2 (Length: 585)
Name: NF19336_low_2
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Original strand, 40583188 - 40583748
Alignment:
| Q |
8 |
gagcagagaggccaactaacagaaaggaaagatatgtcgggaacttgggcctaactgttgggtccactactaactcgtaggcctgttaaggtaagtatta |
107 |
Q |
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| T |
40583188 |
gagcagagaggccaactaacagaaaggaaagatatgtcgggaacttgggcctaactgttgggtccactactaactcgtaggcctgttacggtaagtatta |
40583287 |
T |
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| Q |
108 |
gaaaattgctcttcttactttttaaattgctttattttttcaactatcgttgacctaaggatagttaattgtgtttgacatttttaagattagttaaacc |
207 |
Q |
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| T |
40583288 |
gaaaattgctcttcttactttttaaattgctttattttttcaattgtcgttggcctaacgacagttaattgtgttcgacatttttaagattagttaaact |
40583387 |
T |
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| Q |
208 |
gatttaaaaaatattgaagttttctagaatatgttcaatggtacttaattgcagttggggcatcgacagttaaaaaagagcaatttaaaaagtgagaaga |
307 |
Q |
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| T |
40583388 |
gatttaaaaaatatcgaagttttctagaatatgttcaatggtacttaattgcaattggggcatcgacagttaaaaaagagcaatttaaaaagtgagaaga |
40583487 |
T |
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| Q |
308 |
gtaattttctaagtattatgtatgttgatcttgtaatagaattgcaatacgataatgttatgtataataacaagttcaaaaagattctgtcaaaaaacaa |
407 |
Q |
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| T |
40583488 |
gtaattttctaagtattatgtatgttgctctcgtaatagaattgcaatacgataatgttatgtataataacaagttcaaaaagattctgtcaaaaaacaa |
40583587 |
T |
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| Q |
408 |
atggcataaataataattgttcgactcctacaaaaagttacacatacgaacaactagttattggtgaatatggaaactggacacaaaattggataggtca |
507 |
Q |
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| T |
40583588 |
atggcataaataataattgttctactcctacaaaaagttacgcatacgaacaactagttattggtgaatatggaaactggacacaaaattggataggtca |
40583687 |
T |
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| Q |
508 |
taggtatggatcgttaaaccatttcaactgacccatcaaatcagtcgttccatctttataa |
568 |
Q |
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| T |
40583688 |
taggtatggatcgttaaaccatttcaactgacccatcaaatcagtcgttccatctttataa |
40583748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 6521173 - 6521124
Alignment:
| Q |
171 |
gttaattgt-gtttgacatttttaagattagttaaaccgatttaaaaaat |
219 |
Q |
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| T |
6521173 |
gttaattgtcgtttgacatttttaagattggttaaatcgatttaaaaaat |
6521124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 11442846 - 11442891
Alignment:
| Q |
271 |
cgacagtt-aaaaaagagcaatttaaaaagtgagaagagtaatttt |
315 |
Q |
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| T |
11442846 |
cgacagttgaaaaaagagcaatttaagaagtgagaagagtgatttt |
11442891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 1703696 - 1703652
Alignment:
| Q |
271 |
cgacagttaaaaaagagcaatttaaaaagtgagaagagtaatttt |
315 |
Q |
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| T |
1703696 |
cgacggttaaaaaaaagcaatttaaaaattgaaaagagtaatttt |
1703652 |
T |
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