View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_21 (Length: 310)
Name: NF19336_low_21
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 3188627 - 3188333
Alignment:
| Q |
16 |
gttatttgtgcaggttcttctgagcaaaaatttctggaagcatctattgcttatgtgtctggaaaaccactcatgagtgataaagagtttgatgaattaa |
115 |
Q |
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| T |
3188627 |
gttatttgtgcaggttcttctgagcaaaaatttctggaagcatctattgcttatgtgtctggaaaaccactcatgagtgataaagagtttgatgaattaa |
3188528 |
T |
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| Q |
116 |
aactgaagctaaaggtttgctattttcatttcatgtatagcatatcggcctatagaaacacgagttggtgtgttttgattagaaaatctaataagagttt |
215 |
Q |
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| T |
3188527 |
aactgaagctaaaggtttgctattttcatttcatgtatagcatatcggcctatagaaacacgagttggtgtgttttgattagaaaatctaataagagttt |
3188428 |
T |
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| Q |
216 |
catcgctcacacaaaatctaaacatttactaaatttatatgattttaaaatatagtgtgtgtgtgcacgcgcgtgtaaccatttcttgtagtacc |
310 |
Q |
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| T |
3188427 |
catcgctcacacaaaatctaaacatttactaaatttatatgattttaaaatatagtgtgtgtgtgcacgcgcgtgtaaccatttcttgtagtacc |
3188333 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 42461661 - 42461761
Alignment:
| Q |
40 |
caaaaatttctggaagcatctattgcttatgtgtctggaaaaccactcatgagtgataaagagtttgatgaattaaaactgaagctaaaggtttgctatt |
139 |
Q |
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| T |
42461661 |
caaaaatttcttgaagcttctatggcttatgtttctggaaatccaattttgactgacaaagagtatgataagttgaaattgaatctaaaggtatgcaatt |
42461760 |
T |
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| Q |
140 |
t |
140 |
Q |
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| T |
42461761 |
t |
42461761 |
T |
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