View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_23 (Length: 307)
Name: NF19336_low_23
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 284
Target Start/End: Complemental strand, 31190630 - 31190383
Alignment:
| Q |
33 |
ttatcataatcaactattagttttgtttttcattaaagtatgttcatcaaagtcacccnnnnnnnnnnnnnnnnnnnctgtatagaatatgaggtggcat |
132 |
Q |
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| T |
31190630 |
ttatcataaccaactattagttttgtttttcattaaagtatgttcatcaaagtcacccttttttaatttttgtttttctgtatagaatatgaggtggcac |
31190531 |
T |
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| Q |
133 |
attaaccgtaaatatgacactctatgtggataccacgtcgatgtcacataacaaatatcattttggttgaaataaaatgagagttaaatgactatatatg |
232 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31190530 |
attaaccgtaaatatgacactccatgtggataccacgtcgatgtcacataacaaatatcattttggttgaaataaaatgagagttaaatgac----tatg |
31190435 |
T |
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| Q |
233 |
tttagggaccatcttgtcattaagtggttatttttatggatcattttaaaag |
284 |
Q |
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| T |
31190434 |
tttagggaccatcttatcgttaagtggttatttttatggatcattttaaaag |
31190383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 22407376 - 22407342
Alignment:
| Q |
273 |
tcattttaaaaggggttaaatatgtttttggtccc |
307 |
Q |
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| T |
22407376 |
tcattttaaaaagggttaaatatgtttttggtccc |
22407342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 6374558 - 6374521
Alignment:
| Q |
32 |
attatcataatcaactattagttttgtttttcattaaag |
70 |
Q |
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| T |
6374558 |
attatcataatcaactattag-tttgtttttcattaaag |
6374521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 40399885 - 40399922
Alignment:
| Q |
32 |
attatcataatcaactattagttttgtttttcattaaag |
70 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
40399885 |
attatcataatcaactattag-tttgtttttcattaaag |
40399922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 25560878 - 25560915
Alignment:
| Q |
32 |
attatcataatcaactattagttttgtttttcattaaag |
70 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
25560878 |
attatcataatcaactattag-tttgtttttcattaaag |
25560915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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