View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_24 (Length: 300)
Name: NF19336_low_24
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 6027674 - 6027821
Alignment:
| Q |
153 |
ccatgatgaaggccttgatattttctctagttaatctaacctctgagttttcatcagcatagatatcaagtaaaatatcaagcaaatcactcactgtttc |
252 |
Q |
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| T |
6027674 |
ccatgatgaaggccttgatattttctctagttaatctaacctctgagttttcatcagcatagatatcaagtaaaatatcaagcaaatcactcactgtttc |
6027773 |
T |
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| Q |
253 |
aattccattactatttatttcctccttgtttttcttctttgtatcttc |
300 |
Q |
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| T |
6027774 |
aattccattactatttatttcctccttgtttttcttctttgtatcttc |
6027821 |
T |
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