View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_25 (Length: 279)
Name: NF19336_low_25
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 26947661 - 26947906
Alignment:
| Q |
18 |
tttagatatcaactttcgttacttcattgataccaaagatttgaatgattatagccgtatgattgtttgaacttgttatgatatattaatttcttgatta |
117 |
Q |
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| T |
26947661 |
tttagatatcaactttcgttacttcattgataccaaagatttgaatgattatagccgtatgattgtttgaacttgttatgatatattaatttcttgatta |
26947760 |
T |
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| Q |
118 |
accaagctcaaataatcatatgtatagttcctttgaaaagcaataagactagattagggttttgtgttcatataacaaaagaaaaaagaggaccatcgaa |
217 |
Q |
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| T |
26947761 |
accaagctcaaataatcatatgtatagttcctttgaaaagcaataagacgagattagggttttgtgttc--ataacaaaagaaaaaagaggaccatcgaa |
26947858 |
T |
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| Q |
218 |
aattcatcataagattacttgacatgatcccaataaagtgaagaatta |
265 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
26947859 |
aattcatcataagattacttgacatgatcccaagacagtgaagaatta |
26947906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 32077702 - 32077763
Alignment:
| Q |
26 |
tcaactttcgttacttcattgataccaaagatttgaatgattatagccgtatgattgtttga |
87 |
Q |
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|||||||| ||||| || ||||||||| | |||||||||||||| || ||||||||||||| |
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| T |
32077702 |
tcaacttttgttacctcgttgataccatatgtttgaatgattataaccatatgattgtttga |
32077763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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