View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19336_low_26 (Length: 276)

Name: NF19336_low_26
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19336_low_26
NF19336_low_26
[»] chr4 (2 HSPs)
chr4 (12-257)||(4746922-4747164)
chr4 (208-248)||(44643382-44643422)
[»] chr7 (3 HSPs)
chr7 (25-115)||(31210302-31210392)
chr7 (25-115)||(31206911-31207001)
chr7 (208-257)||(31206765-31206814)
[»] scaffold0933 (1 HSPs)
scaffold0933 (141-257)||(1189-1305)
[»] chr1 (1 HSPs)
chr1 (25-115)||(4242843-4242931)
[»] chr2 (2 HSPs)
chr2 (25-115)||(32424736-32424826)
chr2 (208-248)||(32424919-32424959)
[»] scaffold0216 (1 HSPs)
scaffold0216 (25-104)||(11858-11936)
[»] scaffold0002 (1 HSPs)
scaffold0002 (71-115)||(448511-448555)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 4746922 - 4747164
Alignment:
Q  12 taatacttaaaatttagccttatttgaagttttctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaattataagaaa 111  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||    
T  4746922 taatacttaaaatt-agccttatttgaagttttctctccctagggttacatttatttgcttgctttgaccaagtgataattacttcctaattataaggaa 4747020  T
Q  112 ccactaaacttcctcactatacaaaaacatatggttcttttattttcacaacagaataaacatactttttacagagaactgatcacctctctacataaaa 211  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  4747021 ccaccaaacttgctcactatacaaaaacatatggttcttttattttcacatcagaataaacatactttttacggagaactgatcacctctccacataaaa 4747120  T
Q  212 ttaatttcctcttccttagaaaatcaagtttaggtttcatgggtgc 257  Q
    ||||||||  ||| ||||||||||||| ||||||||||||||||||    
T  4747121 ttaatttc--ctttcttagaaaatcaactttaggtttcatgggtgc 4747164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 44643382 - 44643422
Alignment:
Q  208 aaaattaatttcctcttccttagaaaatcaagtttaggttt 248  Q
    |||||||||||||| || |||| ||||||||||||||||||    
T  44643382 aaaattaatttcctttttcttataaaatcaagtttaggttt 44643422  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 31210392 - 31210302
Alignment:
Q  25 ttagccttatttgaagtttt-ctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaattataagaaaccac 115  Q
    ||||||||||||| |||||| ||||||| ||  ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||||||||    
T  31210392 ttagccttatttgtagtttttctctcccaacatttacaattatttt-ttgctttgatcatgtgttaattacttcctaattataagaaaccac 31210302  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 31207001 - 31206911
Alignment:
Q  25 ttagccttatttgaagtttt-ctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaattataagaaaccac 115  Q
    ||||||||||||| |||||| || |||| ||| ||||| ||||||  ||||||||| || ||||||||||| ||||||||||||| ||||||    
T  31207001 ttagccttatttgtagtttttctttcccaacgtttacaattatttt-ttgctttgaccatgtgttaattacttcctaattataaggaaccac 31206911  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 31206814 - 31206765
Alignment:
Q  208 aaaattaatttcctcttccttagaaaatcaagtttaggtttcatgggtgc 257  Q
    |||||||||||||| || |||| ||||||||||||||||||  |||||||    
T  31206814 aaaattaatttcctttttcttataaaatcaagtttaggttttctgggtgc 31206765  T

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Target: scaffold0933 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 1305 - 1189
Alignment:
Q  141 tatggttctttta-ttttcacaacagaataaacatactttttacagagaactgatcacctctctacata--aaattaatttcctcttccttagaaaatca 237  Q
    ||||||||||||| |||| ||| ||||||||||||||||  |  ||||||||   | |||||| ||| |  |||||||||||| ||||||||||||||||    
T  1305 tatggttcttttaatttttacagcagaataaacatacttgctgtagagaact---cgcctctccacacacaaaattaatttccacttccttagaaaatca 1209  T
Q  238 agtttaggtttcatgggtgc 257  Q
    |||||||||||  |||||||    
T  1208 agtttaggtttattgggtgc 1189  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 4242931 - 4242843
Alignment:
Q  25 ttagccttatttgaagttttctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaattataagaaaccac 115  Q
    |||| |||||||| |||||||||| || ||  ||||| ||||||  |||||||||||| ||||||||||| | ||||||||||| ||||||    
T  4242931 ttagtcttatttgtagttttctcttccaacatttacaattattt--ttgctttgatcatgtgttaattacttactaattataaggaaccac 4242843  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 32424736 - 32424826
Alignment:
Q  25 ttagccttatttgaagtttt-ctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaattataagaaaccac 115  Q
    ||||||||||||| |||||| ||| ||| | | ||||| ||||||  ||||||||| || ||||||||||| ||||||||||||| ||||||    
T  32424736 ttagccttatttgtagtttttctcccccaatgtttacaattatttt-ttgctttgaccatgtgttaattacttcctaattataaggaaccac 32424826  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 32424919 - 32424959
Alignment:
Q  208 aaaattaatttcctcttccttagaaaatcaagtttaggttt 248  Q
    |||||||||||||| || |||| ||||||||||||||||||    
T  32424919 aaaattaatttcctttttcttataaaatcaagtttaggttt 32424959  T

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Target: scaffold0216 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 11858 - 11936
Alignment:
Q  25 ttagccttatttgaagtttt-ctctccctacggttacatttatttgcttgctttgatcaagtgttaattacatcctaatta 104  Q
    ||||||||||||  |||||| |||| || ||| ||||||||||||  ||||||||| || ||||||||||| |||||||||    
T  11858 ttagccttatttttagtttttctctaccaacgtttacatttattt--ttgctttgaccatgtgttaattacttcctaatta 11936  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 448511 - 448555
Alignment:
Q  71 ttgctttgatcaagtgttaattacatcctaattataagaaaccac 115  Q
    ||||||||| || ||||||||||| ||||||||||||| ||||||    
T  448511 ttgctttgaccatgtgttaattacttcctaattataaggaaccac 448555  T

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