View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19336_low_30 (Length: 237)

Name: NF19336_low_30
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19336_low_30
NF19336_low_30
[»] chr5 (4 HSPs)
chr5 (134-225)||(20809235-20809325)
chr5 (1-77)||(20830840-20830916)
chr5 (1-102)||(20809141-20809234)
chr5 (134-170)||(20831051-20831087)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 20809235 - 20809325
Alignment:
Q  134 catgcaaaatgttagccacacattttgtttctcaacagactccatttggtcaacgtgagtcgtcgggacaacattacatcaaaacacaacat 225  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20809235 catgcaaaatgttagccacacattt-gtatctcaacagactccagttggtcaacgtgagtcgtcgggacaacattacatcaaaacacaacat 20809325  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 20830840 - 20830916
Alignment:
Q  1 aacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcattt 77  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20830840 aacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttgatatttatgcaagtcattt 20830916  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 20809141 - 20809234
Alignment:
Q  1 aacatattcccccattaaattagatcaaaattagataattatattaaatttcattttgatatttatgcaagtcatttattttcattatcctaattcctta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  20809141 aacatattcccccattaaattagatcaaaattaaataattatattaaatttcattttga--------caagtcatttattttcattatcctaattcctta 20809232  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 20831051 - 20831087
Alignment:
Q  134 catgcaaaatgttagccacacattttgtttctcaaca 170  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  20831051 catgcaaaatgttagccacaccttttgtttatcaaca 20831087  T

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