View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_4 (Length: 571)
Name: NF19336_low_4
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 558
Target Start/End: Original strand, 28009937 - 28010498
Alignment:
| Q |
7 |
gtactaacaagaacacaccaatagaagccacttcatacgacgaccaaacaccaccttccttacaatgagggaatgtataaggcggctaaactagtatttt |
106 |
Q |
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| T |
28009937 |
gtactaacaagaaaacaccaatagac-ccacttaatacgacgaccaaacaccaccttccttacaatgagggaatgta--aggcggctaaactagtattta |
28010033 |
T |
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| Q |
107 |
tataaacttctttgagagaaaaaa--------taaaacccttttgttttgcactcttaagtttctgcattgttatccatggaaataattttct-taggct |
197 |
Q |
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| T |
28010034 |
tataaacttctttgagagaaaaaaataaaaaataaaacccttttgttttgcactcttaagtttctgcattgttatccatggaaataattttctgtaggct |
28010133 |
T |
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| Q |
198 |
ataacatatattctcgtcaaagaaacttagtaaattacaaaaagtctggtagtgccaacaattttctgtggggccataacaaactgcagttgttcaaagt |
297 |
Q |
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| T |
28010134 |
ataacatatattctcgtcaaagaaacttagtaaattacaaaaagtctggtagtgccaacaattttctgtggggccataacaaactgcagttgttcaaagt |
28010233 |
T |
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| Q |
298 |
ttcaccttccaaaagacacacatg----catgcatgcatatgtatttgtctttattttaaaatgccaacgacttcagctttcttacaaattgacttgtca |
393 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28010234 |
ttcaccttccaaaagacacacatgcatgcatgcatgcatatgtatttgtctttattttaaaatgccaacgacttcagcttttttacaaattgacttgtca |
28010333 |
T |
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| Q |
394 |
aagtcttctcctacacaaacacaaactgactcatattctctttataataatagtagtatgagtccacttctgtctacaaaataattaccaatctcctaaa |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28010334 |
aagtcttctcctacacaaacacaaactgactcatattctctttataataatagtagtatgagtccacttctgtctacaaaataattaccaatctcctaaa |
28010433 |
T |
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| Q |
494 |
aaacgcattatttaagttgaattggtgcaaaatagcttttagggttttcactttgagttcctctt |
558 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28010434 |
aaaagcattatttaagttgaattggtgcaaaatagcttttagggttttcactttgagttcctctt |
28010498 |
T |
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