View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_6 (Length: 537)
Name: NF19336_low_6
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 46565356 - 46564829
Alignment:
| Q |
1 |
tgttaaaattgaaaactaaaaatagagatgtagtagaaatggcttacgagtgatggtactatggtaagtacttaatgtttgaattcatgataaattttaa |
100 |
Q |
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| T |
46565356 |
tgttaaaattgaaaactaaaaatagagatgtaatagaaatggcttacgagtgatgctactatggtaagtacttaatgtttgaattcattttaactgaatt |
46565257 |
T |
|
| Q |
101 |
ctgaattttgatgagcgactgtgataaattcattgtgatacaaacatgcattaagaatgtctttcaattcttaaaattgatgttgttgcggaatataatg |
200 |
Q |
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| T |
46565256 |
ttgaattttgatgagcgactgtgataaattcattgtgatacaaacatgcattaagaatgtctttcaattcttaaaattgatgttgttgcggaatataatg |
46565157 |
T |
|
| Q |
201 |
tggaataggaatgaacgagtcaaaggattttgctggtgagttatttgatgcattggctcgtcgccgggggataacatcagcttccataaccaaggatgaa |
300 |
Q |
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| T |
46565156 |
tggaataggaatgaacgagtcaaaggattttgctggtgagttatttgatgcattggctcgtcgccgggggataacatcagcttccataaccaaggatgaa |
46565057 |
T |
|
| Q |
301 |
ctgcgccaattttgggaacaaattacggaccaaagctttgattcaagactgcagaccttctttgatatgtaaaatttaatttcctttat------cgttt |
394 |
Q |
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| T |
46565056 |
ctgcgccaattttgggaacaaattacggaccaaagctttgattcaagactgcagaccttctttgatatgtaaaatttaatttcctttatcgttatcgttt |
46564957 |
T |
|
| Q |
395 |
tataataa--ttannnnnnnnatgatagcttaggatatgccatagttaattaagaaattaatcatttgatcaaaagaaaaatcgctatcaagacataaga |
492 |
Q |
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| T |
46564956 |
tataataatttttttttttttatgatagcttaggatatgccatagttaattaagaaattaatcatttgatcaaaagaaaaatcgctatcaagacataaga |
46564857 |
T |
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| Q |
493 |
aaaactacgccgcactcggtgctatttt |
520 |
Q |
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| T |
46564856 |
aaaactacgccgcactcggtgctatttt |
46564829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 37064020 - 37064178
Alignment:
| Q |
206 |
taggaatgaacgagtcaaaggattttgctggtgagttatttgatgcattggctcgtcgccgggggataacatcagcttccataaccaaggatgaactgcg |
305 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| || || ||| | | ||||||||||| ||||| || |||| |
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| T |
37064020 |
taggaatgaacgagtcaaaggagtttgctggtgagttatttgatgccttagcacgtcgtcgaggtatagtagctgcttccataacaaaggaagagttgcg |
37064119 |
T |
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| Q |
306 |
ccaattttgggaacaaattacggaccaaagctttgattcaagactgcagaccttctttg |
364 |
Q |
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|||||||||| |||||||| || ||||||||||||||||| || |||||||| |||| |
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| T |
37064120 |
agaattttgggaccaaattactgatcaaagctttgattcaaggcttcagaccttttttg |
37064178 |
T |
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