View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_8 (Length: 436)
Name: NF19336_low_8
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_8 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 14282 - 14665
Alignment:
| Q |
16 |
gttaaaactgatacctggaaaaacaggtcatctggtcatggaaaagagttatacaaaactttgtttggcgatgtttttattttggccgattttaaacctg |
115 |
Q |
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| T |
14282 |
gttaaaactgatacttggaaaaacaggtcctctggtcatggaaaagagttatacaaaacattgtttggcgatgtttttattttggcagattttaaacctg |
14381 |
T |
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| Q |
116 |
aaacggttaatgatttgcaaaggtctggaaggacttggagttttgtgttgtctgctgggattcttgatgaggagattgaaggagacgacgatgagactaa |
215 |
Q |
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| T |
14382 |
aaacggttaatgatttgcaaaggtcaggaagaacgtggagttttgtgttgtcggctggttttctagatgaggagatccaaggcgaagatgatgatactaa |
14481 |
T |
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| Q |
216 |
agttatgtcgacttttaaagtcattgcttctaaagacattgacattgatgaaatagggcaaaaatctttgtttattatattcttgacgaatataatcccc |
315 |
Q |
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| T |
14482 |
acttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaaaatctttgtttattatattcttgacgaatataacacct |
14581 |
T |
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| Q |
316 |
aacagaagaatatggagcgcgctacatatggatggagattcaaagctgattcagaagattttatgtgctagtgatgtggtaaga |
399 |
Q |
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| T |
14582 |
aatagaagaatatggaacgtgctgcatatgggtggagagtcaaagctgattaagaaaattttatgtcccagtgttgtggtaaga |
14665 |
T |
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