View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19336_low_9 (Length: 434)
Name: NF19336_low_9
Description: NF19336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19336_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 5173517 - 5173922
Alignment:
| Q |
20 |
gtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgat |
119 |
Q |
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| T |
5173517 |
gtgacctcttgatgatttctttcggctacggattccattatcagttgcttgtgctaccatgtttgcaaattccgggttattgagttagatttctaatgat |
5173616 |
T |
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| Q |
120 |
aaaaatagatttgatgtctcaattgtgtcactaaattt-ggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173617 |
aaaaatagatttgatgtctcaattgtgtcactaaattttggatgacgaaccttttgaacttcaattgtagatcatttataaacttaaatttgaaagcagc |
5173716 |
T |
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| Q |
219 |
atttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgcaactatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173717 |
atttttagctataggataatgacaagtaacaacatgtcaaaagcctatgcacataattatttatcgttgtaaatcggatatccttcacgtgcaactatat |
5173816 |
T |
|
| Q |
319 |
agactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaaacctagga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173817 |
agactaatccctcgagttaaatagagtcacgagggtgatacaactctccattaagagttttaacgctgctgcattctcagagctggattgaaacctagga |
5173916 |
T |
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| Q |
419 |
cctatg |
424 |
Q |
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|||||| |
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| T |
5173917 |
cctatg |
5173922 |
T |
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