View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_high_1 (Length: 814)
Name: NF19337_high_1
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 5 - 798
Target Start/End: Complemental strand, 26955419 - 26954621
Alignment:
| Q |
5 |
ggatgtcgaagaatatataacttggtgagagaactcatagatcgaagctcttaatagttcttaatcactacaaaataaccgtgtgataattatgataata |
104 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
26955419 |
ggatgttgaataatatataacttggtgagagaactcatagatcgaagctcttaatagctcttaattactacaatataaccgtgtgataattatgataata |
26955320 |
T |
|
| Q |
105 |
aatagtgaaagaattatgcactaccagctgatcaaacacgccccttgcaagattggagtgtcgtgaatagttttgatcttgtttcttagatgttgatgac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26955319 |
aatagtgaaagaattatgcactaccagctgatcaaacacgccccttgcaagattggagtgtcgagaatagttttgatcttgtttcttagatgttgatgac |
26955220 |
T |
|
| Q |
205 |
ggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttccttgttgtaccaattgctgaacaaa |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26955219 |
ggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggggttgacatgtttgactttgagttttccttgttgtaccaattggtgaacaaa |
26955120 |
T |
|
| Q |
305 |
gtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagagaatgttgag |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955119 |
gtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagagaatgttgag |
26955020 |
T |
|
| Q |
405 |
gaagagagacccaattcagtcagaagagagttgatccaggatgcaataatggctaatgctttgtacttagccttggtggatgaccttgctactgct---- |
500 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955019 |
gaagagagacccaattcattcagaagagagttgatccaggatgcaataatggctaatgctttgtacttagccttggtggatgaccttgctactgctcttt |
26954920 |
T |
|
| Q |
501 |
-cttcgatgatttccacaagatgaggttggaactctagtagacaatgtgagcagatgtgtagtcatctttattatcagtccaatcagtatccttatatgc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954919 |
gcttcgatgatttccacaagatgaggttggaactctagtagacaatgtgagcagatgtgtagtcatctttattatcagtccaatcagtatccttatatgc |
26954820 |
T |
|
| Q |
600 |
aatgagtgtagaagaattctgtttccgaagaaaaaggccatgaaaattgtacctttgaggcggcgcagaatcctctttagaggagtcaaatgagtggtag |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
26954819 |
aatgagtgtagaagaattctgtttccgaagaaaaaggccatgaaaattgtacctctgatgcggtgcagaatcctctttagaggagtcaaatgagtggtag |
26954720 |
T |
|
| Q |
700 |
tgaatctttgcacgaactaagaaagattatattaacagtaaatgcaatgtcaggtcatgtcatggataagtattgagactgtctatggtgctacgatag |
798 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26954719 |
tggatctttgcacgaactaagaaagattatattaacagtaaatgcaatgtcaggtcatgtcatggataagtattgacactgtctatggtgctacgatag |
26954621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 364
Target Start/End: Original strand, 26590040 - 26590213
Alignment:
| Q |
191 |
tagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttccttgttgtacc |
290 |
Q |
| |
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|||| |||||||||| ||| |||||||||||||||| | |||||| ||| |||| ||||||||||| | | ||||||||| |||||||||| |
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| T |
26590040 |
tagaagttgatgacgcgctttggagagaggtttggtgaggaagtcagctagttggtcaactgtgttgacatgatgaattttgagtttctgttgttgtacc |
26590139 |
T |
|
| Q |
291 |
aattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
364 |
Q |
| |
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|| | ||||||||||||| ||||||| ||| ||||||||| | |||||||||| | |||||| |||||||| |
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| T |
26590140 |
aaatcgcgaacaaagtgaatgtcaatggcgatatgtttcatgcgagtgtggtacataggattgtgcgtaagata |
26590213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 3544124 - 3543940
Alignment:
| Q |
180 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
279 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
3544124 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
3544025 |
T |
|
| Q |
280 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
364 |
Q |
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||||||| || | | ||||||| ||||| ||||||||||||||||||||| | ||||| || || | ||| ||||||||||| |
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| T |
3544024 |
cttgttggactagatcacgaacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
3543940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 364
Target Start/End: Original strand, 34695640 - 34695824
Alignment:
| Q |
180 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
279 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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| T |
34695640 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
34695739 |
T |
|
| Q |
280 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
364 |
Q |
| |
|
||||||| || | | | ||||| ||||| ||||||||||||||||||||| | ||||| || || | ||| ||||||||||| |
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| T |
34695740 |
cttgttggactagatcacggacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
34695824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 5403137 - 5402953
Alignment:
| Q |
180 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
279 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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|
| T |
5403137 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
5403038 |
T |
|
| Q |
280 |
cttgttgtaccaattgctgaacaaagtgaatatcaatggagatgtgtttcatgtgtgtgtggtacactgaattgtgagtaagata |
364 |
Q |
| |
|
||||||| || | | | ||||| ||||| ||||||||||||||||||||| | ||||| || || | ||| ||||||||||| |
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|
| T |
5403037 |
cttgttggactagatcacggacaaaatgaatgtcaatggagatgtgtttcatgcgagtgtgatataccggattttgagtaagata |
5402953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 6517192 - 6517298
Alignment:
| Q |
180 |
atcttgtttcttagatgttgatgacggaattttgagagaggtttggtgaaacaatcagctcattgatcaatggtgttgacatgtttgactttgagttttc |
279 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||| |||| |||||| ||| |||||||| | ||| ||||||| | | ||||||||| | |
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|
| T |
6517192 |
atcttgtttcgtagataatgatgtcgaccttttgagagaggttttgtgagacaatctgctaattgatcagtagtgctgacatgctgaattttgagtttcc |
6517291 |
T |
|
| Q |
280 |
cttgttg |
286 |
Q |
| |
|
||||||| |
|
|
| T |
6517292 |
cttgttg |
6517298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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