View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_high_12 (Length: 354)
Name: NF19337_high_12
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 55119076 - 55119393
Alignment:
| Q |
1 |
tgtgttaagaagatataaggctatttgtttt-ttgttttctttatctttcggattatttgggttgacttgtgtgtctcttctggtttattagacctttgc |
99 |
Q |
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| T |
55119076 |
tgtgttaagaagatataaggctatttgtttttttgttttctttatctttcggattatttgggttgacttgtgtgtctcttctggtttgttagacctttac |
55119175 |
T |
|
| Q |
100 |
ttaattttctactctaagattactgaatttctttatcaaatttacgattagcataaactattcttatttatcgtgttattattatattgctatagaacga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55119176 |
ttaattttctactctaagattactgaatttctttatcaaatttacgattagcataaactattcttatttatcgtgttagtattatattgctatagaacga |
55119275 |
T |
|
| Q |
200 |
tatctttgagttatagagttttttctttgaaaaacatataaagtttaattgatggctcacacaactcagtttataaaattgattaaaatagccaataagt |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55119276 |
tatctttgagttat---------------------atataaagtttaattgatggctcacacaactcagtttataaaattgattaaaatagccaataagt |
55119354 |
T |
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| Q |
300 |
ttgattatttggcaaagagtcaatctttttggtgttaat |
338 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
55119355 |
ttgattatttggcaaagagtcgatctttttggtgttaat |
55119393 |
T |
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