View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19337_high_2 (Length: 546)
Name: NF19337_high_2
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_high_2 |
 | |
|
| [»] scaffold0425 (3 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 37)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 6264009 - 6263495
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6264009 |
actcatgtcattgaaaccaccctagagaaaattctagttagcagtgcctttcttgaagaactggaagttgaagacttctttggtccaaatctagaatggt |
6263910 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
6263909 |
cctctttgaatatgtgtagctgtaattcccttcgcactttaactataacaggttggcactcttcttcctttccttttgcactacatttgttcaccaatct |
6263810 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
6263809 |
taattctctcgtgttgtacaattgtccgtggctggaatcgttttttgagaggcagttgccttccaacctaagcagcctccgaatagaaagatgccgtaat |
6263710 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6263709 |
ttgatggctacaatagaggagtggggtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagagg |
6263610 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
6263609 |
agagtatgctgccatcaagtattaactcttttgagttgacaaattgtcccaacctaagaaaaataaactgcaagggtcttctccacctcacttcactcaa |
6263510 |
T |
|
| Q |
519 |
atctttatatattga |
533 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
6263509 |
atctctatatattga |
6263495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 6243644 - 6243130
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
|||||| |||||||| || | |||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6243644 |
actcagatcattgaatccgccctagagaaaattctatttaacagtacctttcttgaagaattggaagttgaagacttctttggtcaaaatctagaatggt |
6243545 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
| ||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6243544 |
cctctttggatatgcgtagctgtaattctcttcgcactttaaccataacaagttggcactcttcctccttgccttttgcactacacttgttcaccaatct |
6243445 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6243444 |
taattctctcgtgttgtacgattgtccattgctggaatcatttttcgggaggcagttgccttccaacctaggcagcctccgaatagaaagatgccctaat |
6243345 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
6243344 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttcgagtcctttccagagg |
6243245 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6243244 |
agagtatgctgccatcaagtattaactctcttgatttgaaaaattgttcctgcctaaaaaaaataaactgcaagggtcttctccacctcacttcacttga |
6243145 |
T |
|
| Q |
519 |
atctttatatattga |
533 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
6243144 |
atctctatatattga |
6243130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 6140613 - 6140099
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| |||| ||| | ||||||||||||||| |||||||||||||||||||||| || |||| | ||||||| |
|
|
| T |
6140613 |
actcacgtcattgaatccaccctagagaaagttctaattaatagtgcctttcttgaagagttggaagttgaagacttctttggtcaaaatatggaatggt |
6140514 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
6140513 |
cctctttgtatatgtgtagctgttattcccttcgcactttaactataacaggttggcactcttcttccttgccttttgcactatacttattcaacaatct |
6140414 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6140413 |
taattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaat |
6140314 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6140313 |
ttgatggcttcaatagaggagtggggtttgttcaaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagagg |
6140214 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6140213 |
agagtctgctgccatcaactattaactctcttgagttgacaaattgttcaaacctaaaaaaaataaactacaagggtcttctccacctcacttcacttga |
6140114 |
T |
|
| Q |
519 |
atctttatatattga |
533 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
6140113 |
atctctatatattga |
6140099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 6257530 - 6257015
Alignment:
| Q |
18 |
cactcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatgg |
117 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||| |||| ||| | ||||||||||||||| |||||||||||||||||||||| || |||| | |||||| |
|
|
| T |
6257530 |
cactcacgtcattgaatccaccctagagaaagttctaattaatagtgcctttcttgaagagttggaagttgaagacttctttggtcgaaatatggaatgg |
6257431 |
T |
|
| Q |
118 |
tcgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatc |
217 |
Q |
| |
|
|| ||||| || ||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6257430 |
tcctctttgcatgtgtgtagctgttattccctttgcactctaactataacaggttggcactcttcttccttgccttttgcactacacttgttcaccaatc |
6257331 |
T |
|
| Q |
218 |
taaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaa |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6257330 |
ttaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaa |
6257231 |
T |
|
| Q |
318 |
tttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
6257230 |
tttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattcactcttagtgacgattttgaaatcttcgaatcctttccagag |
6257131 |
T |
|
| Q |
418 |
gagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttg |
517 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6257130 |
gagagtatgctgccatcaactattaactctcttgagttgacaaattgttcaaacctaacaaaaataaactacaagggtcttctccacctcacttcacttg |
6257031 |
T |
|
| Q |
518 |
aatctttatatattga |
533 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
6257030 |
aatctctatatattga |
6257015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 6167224 - 6166706
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| |||| ||| | |||||||||| |||| |||||||||||||||||||||| || |||| | ||||||| |
|
|
| T |
6167224 |
actcacgtcattgaatccaccctagagaaagttctaattaatagtgcctttcttaaagagttggaagttgaagacttctttggtcgaaatatggaatggt |
6167125 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
6167124 |
tctctttgtatatgtgtagctgttattcccttcgcactttaactataacaggttggcactcttcttccttgccttttgcactacacgtattcaacaatct |
6167025 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6167024 |
taattctctcgtgttgtacgattgtccattgctggaatcgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaat |
6166925 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | || ||| ||| ||| |
|
|
| T |
6166924 |
ttgatggcttcaatagaggagtggggtttgttcaaactcaaatctctgaaacaattaagtcttagtgatgattttgaaatcttcgcattcttgccaaagg |
6166825 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
6166824 |
agactatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaaaaataaactacaacggtcttttccacctcacttcacttga |
6166725 |
T |
|
| Q |
519 |
atctttatatattgatgat |
537 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
6166724 |
atctctatatattgatgat |
6166706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 6898415 - 6897901
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
||||||||||||||| || | |||||||||||||| |||||| |||||||||||||| || ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6898415 |
actcaggtcattgaatccgccctagagaaaattctatttagcagtgcctttcttgaagtgttagaagttgaagacttctttggtcaaaatctagaatggt |
6898316 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
6898315 |
cctctttggatatgtgtagctgtaattcactttgcactctaactataacaggttggcactcttcctccttgccatttgcactgcacttgttcaccaatct |
6898216 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
6898215 |
tcattctctggtgttgtacgatagtccatggctggaatcgttttgctggaggcagttgccttgcaacctatgcagcctccgaatagaaagatgtcctaaa |
6898116 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
6898115 |
ttgatggcttcgagagaggagtggggtttgttccaactcaattctctgaaacagttcagtgtaagtgatgattttgaaatcttggagtcctttccggaga |
6898016 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
||||| |||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6898015 |
agagtctgctgccatcaactatgaaatctcttgagttaacaaattgttccaacctaagaataataaactataagggtcttctccacctcacttcacttga |
6897916 |
T |
|
| Q |
519 |
atctttatatattga |
533 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
6897915 |
atctctatatattga |
6897901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 6593055 - 6593569
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
|||||||||||| || || | |||||||||||||| ||| || || |||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
6593055 |
actcaggtcattaaatcctccctagagaaaattctatttaacagtgtctttcttgaagagttggaagttgaggacttctttgattcaaatctagaatggt |
6593154 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatct |
218 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6593155 |
cctctttggacatgtgtagctgtaattctcttcgcactttaactataacaggttggcactcttcctccttgccttttgctctacacttgctcaccaatct |
6593254 |
T |
|
| Q |
219 |
aaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaat |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||||| || |||||||| |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
6593255 |
taattctctcgttttgtacgattgtccatggctagggtcgttttcaggcaggcagttgccttccaacctatgcagcctccgaatagaaagatgtcctaaa |
6593354 |
T |
|
| Q |
319 |
ttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagg |
418 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
6593355 |
ttaatggcttcgagagaggagtggggtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttggagtcctttccggagg |
6593454 |
T |
|
| Q |
419 |
agagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttga |
518 |
Q |
| |
|
||||| |||| ||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6593455 |
agagtctgcttccatcaactattaaatcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttga |
6593554 |
T |
|
| Q |
519 |
atctttatatattga |
533 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
6593555 |
atctctatgtattga |
6593569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 63 - 533
Target Start/End: Complemental strand, 6915384 - 6914914
Alignment:
| Q |
63 |
tgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggtcgactttggatatgtgtagctgtaattcccttcacactttaact |
162 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
6915384 |
tgccattcttgaagaattggaagttgaagacttctttggtccaaatctagaatggtcctctttggacatgtgtagctgtaattctcttcgtgctttaact |
6915285 |
T |
|
| Q |
163 |
ataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgtttt |
262 |
Q |
| |
|
|||||| ||||||||||||| || || |||||| ||||||| |||||||||||||| ||||||||| |||||| || ||||||||||||||||| |||| |
|
|
| T |
6915284 |
ataacaggttggcactcttcctcatttccttttacactacaattgttcaccaatcttcattctctcgcgttgtatgagtgtccatggctggaatcatttt |
6915185 |
T |
|
| Q |
263 |
ttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatc |
362 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
6915184 |
ttgggaggcagttgccttccaacctaggcagcctccgaatagaaagatgtccaaacttgacggcttctagagaggagtggggtttgttccaactcaattc |
6915085 |
T |
|
| Q |
363 |
tctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaat |
462 |
Q |
| |
|
||| |||||||| ||| ||||||||||||| | |||||||| |||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
6915084 |
tctaaaacaattatgtgttagtgatgatttgaatatcttggagtcctttccagaggagagtctgctgccatcaactattaaatctctcgagttgacaaat |
6914985 |
T |
|
| Q |
463 |
tgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga |
533 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6914984 |
tgttccaacctaaaaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattga |
6914914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 40 - 533
Target Start/End: Original strand, 6723802 - 6724295
Alignment:
| Q |
40 |
ctagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggtcgactttggatatgtgtagct |
139 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
6723802 |
ctagagaaaattctatttaacagtgcctttctagaagagttggaagttgaagacttctttgatcataatctagaatggtcctctttggatatgtgtagct |
6723901 |
T |
|
| Q |
140 |
gtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacga |
239 |
Q |
| |
|
||||||| |||| |||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
6723902 |
gtaattctcttcgcactctaactataacaggttggcactcttcctccttgccttttgctctacacttgctcaccaatcttaattctctcgttttgtacga |
6724001 |
T |
|
| Q |
240 |
ttgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggag |
339 |
Q |
| |
|
||||||| |||||| |||||||| || |||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||| | ||||||| |
|
|
| T |
6724002 |
ttgtccactgctggagtcgtttttcggcaggcagttaccttccagcctatgcagcctccgaatagaaagatgtcctaaattaatggcttcgagagaggag |
6724101 |
T |
|
| Q |
340 |
tggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagta |
439 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||||| || |||||||| ||||||||| |||| ||||||| || |
|
|
| T |
6724102 |
tggggtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttagagtcctttccggaggagagtctgcttccatcaacta |
6724201 |
T |
|
| Q |
440 |
ttacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga |
533 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
6724202 |
ttaaatcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattga |
6724295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 63 - 533
Target Start/End: Complemental strand, 6880799 - 6880329
Alignment:
| Q |
63 |
tgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggtcgactttggatatgtgtagctgtaattcccttcacactttaact |
162 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||| ||||| |||| |||| ||||| |
|
|
| T |
6880799 |
tgcctttcttgaagagttggaagttgaagacttctttggtccaaatctagaatggtcctctttggacatgtgcagctgcaattctcttcgcactctaact |
6880700 |
T |
|
| Q |
163 |
ataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgtttt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||| | |||||||||||| || |||| |
|
|
| T |
6880699 |
ataacaagttggcactcttcttccttgccttttccactgcacttgttcaccaatcttaattctctcatgttgtacgactatccatggctggagtcatttt |
6880600 |
T |
|
| Q |
263 |
ttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatc |
362 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||| |||| ||| ||| ||||| ||||||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
6880599 |
ctgggaggcagttgccttccaacctatgtagcctccaaataaaaaaatgtcctaagttgatggcttcgagagaggagtggggtttgttccaactcaattc |
6880500 |
T |
|
| Q |
363 |
tctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaat |
462 |
Q |
| |
|
||||||||||||| || || |||||||||| ||||||||||| |||||||| ||||||||| |||||||||||| ||| | ||||||||||| |||||| |
|
|
| T |
6880499 |
tctgaaacaattcagtgttggtgatgatttggaaatcttggagtcctttccggaggagagtctgctgccatcaactatgaaatctcttgagttaacaaat |
6880400 |
T |
|
| Q |
463 |
tgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||| |||||| |
|
|
| T |
6880399 |
tgttccaacctaagaataataaactacaagggtcttctccacatgacctcacttgaatctctatgtattga |
6880329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 174 - 533
Target Start/End: Original strand, 13275261 - 13275620
Alignment:
| Q |
174 |
gcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcag |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13275261 |
gcactcttcttccttgccttttgcactacatttgttcaccaatcttaattctctcgtgttgtacaattgtccgtggctggaatcgtttttttagaggcag |
13275360 |
T |
|
| Q |
274 |
ttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaat |
373 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13275361 |
ttgccttccaacctaagcagcctccgaatagaaagatgccgtaatttgatggctacaatagaggagtggggtttgttcaaactcaaatctctgaaacaat |
13275460 |
T |
|
| Q |
374 |
tctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacct |
473 |
Q |
| |
|
|| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13275461 |
tcagtcttagtgatgattttgaaatctttgagtcctttccagaagagagtatgctgccatcaactattaactctcttgagttgacaaattgttcaaacct |
13275560 |
T |
|
| Q |
474 |
aagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga |
533 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13275561 |
aagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga |
13275620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 498
Target Start/End: Complemental strand, 7748324 - 7747850
Alignment:
| Q |
24 |
ggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggtcgact |
123 |
Q |
| |
|
|||||||||| |||| |||||||||||| | ||| || || ||||||||| | |||||||||||||||||||||| ||||||| |||||||||| || |
|
|
| T |
7748324 |
ggtcattgaatccaccctagagaaaattttatttaacagcgcttttcttgaaaagttggaagttgaagacttctttggtccaaatttagaatggtcctct |
7748225 |
T |
|
| Q |
124 |
ttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatctaaatt |
223 |
Q |
| |
|
| ||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
7748224 |
tcggatatgtgtagctgtaattctcttcgcagtctaactataacaggttggcactcttcctatttgccttttgcactgcacttgttcaccaatcttcatt |
7748125 |
T |
|
| Q |
224 |
ctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgat |
323 |
Q |
| |
|
|||| ||||||| ||| |||||||||| |||| ||||| ||||||||| | || ||||| ||| ||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
7748124 |
ttctcatgttgtatgatagtccatggctagaattgttttccgggaggcagctgccctccaatctatgcagcctccgagtagaaagatgtcctaaattgat |
7748025 |
T |
|
| Q |
324 |
ggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagt |
423 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
7748024 |
ggcttcgagagaggagtggggtttgttccaactcaaatctctaaaacaattatgtgttagtgatgattttgaaatcttggagtcctttccggaggagagt |
7747925 |
T |
|
| Q |
424 |
atgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtctt |
498 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7747924 |
ctgctgccatcaactattacatctcttgagttaaaaaattgttccaacctaagaagaataaactacaagggtctt |
7747850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 324 - 533
Target Start/End: Complemental strand, 6236069 - 6235860
Alignment:
| Q |
324 |
ggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagt |
423 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236069 |
ggcttcgagagaggagtggggtttgttccaactcaaatctttaaaacaattgagtgttagtgatgattttgaaatcttggaatcctttccagaggagagt |
6235970 |
T |
|
| Q |
424 |
atgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctt |
523 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6235969 |
atgctgccatcaactattaactctcttgagttgacaaattgttccaacctaagaaaaatcaactacaagggtcttctccacctcacttcacttgaatctc |
6235870 |
T |
|
| Q |
524 |
tatatattga |
533 |
Q |
| |
|
|||||||||| |
|
|
| T |
6235869 |
tatatattga |
6235860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 63 - 283
Target Start/End: Original strand, 6851024 - 6851244
Alignment:
| Q |
63 |
tgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggtcgactttggatatgtgtagctgtaattcccttcacactttaact |
162 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||| |||| |||| ||||| |
|
|
| T |
6851024 |
tgcctttcttgaagagttgaaagttgaagacttctttggtccaaatctagaatggtcctctttggatttcaatagctgtaattctcttcgcactctaact |
6851123 |
T |
|
| Q |
163 |
ataacaagttggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgtttt |
262 |
Q |
| |
|
| |||| ||||||| ||||| |||||||||||||||| ||| ||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
6851124 |
acaacaggttggcattcttcctccttgccttttgcaccacaattgttcaacaatcttgattctcttgttttgtacgattgtccatggctggaatcgtttt |
6851223 |
T |
|
| Q |
263 |
ttgggaggcagttaccttcca |
283 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
6851224 |
ttgggaggcagttacattcca |
6851244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 13272255 - 13272414
Alignment:
| Q |
19 |
actcaggtcattgaaaccacactagagaaaattcttgttagcaatgcctttcttgaagaattggaagttgaagacttctttgctccaaatctagaatggt |
118 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||| ||||| | | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13272255 |
actcatgtcattgaaatcaccctagagaaaattctagttagtagtccctttcttgaagaactggaagttgaagacttctttggtccaaatctagaatggt |
13272354 |
T |
|
| Q |
119 |
cgactttggatatgtgtagctgtaattcccttcacactttaactataacaagttggcact |
178 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
13272355 |
cctctttggatatgtgtagttgtaattcccttcgcactttaactataacaggttggcact |
13272414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 508
Target Start/End: Complemental strand, 6941952 - 6941777
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
|||||||||||||||||||||||||| || || | |||||| | |||||||||| ||||||| |||| ||||| |||||||||| | |||||||| |
|
|
| T |
6941952 |
agaggagtggggtttgttccaactcagttccttgttagaattctctgttagtgatgagtttgaaaatgtggagtccttcccagaggagaatctgctgcca |
6941853 |
T |
|
| Q |
433 |
tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
||||| |||| |||| | |||| ||||||||| || ||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
6941852 |
ccaagtcttactgatcttaatttgagaaattgttcaaagctaagaataatgaacaaaaagggttttctccacctca |
6941777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 421
Target Start/End: Original strand, 6481986 - 6482087
Alignment:
| Q |
320 |
tgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagga |
419 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||||||| ||||||||| | || | |||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
6481986 |
tgattgcttcaagagaagagtggggtttgttccaactcaattctctgaaagagtttagagttagtgatgagtttgaaaacgtggaatcctttccagagga |
6482085 |
T |
|
| Q |
420 |
ga |
421 |
Q |
| |
|
|| |
|
|
| T |
6482086 |
ga |
6482087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 508
Target Start/End: Complemental strand, 8469574 - 8469401
Alignment:
| Q |
335 |
aggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatc |
434 |
Q |
| |
|
||||||||||||||||| |||||| || ||||| ||||| | |||| ||||| ||||||| | | || ||||| |||||||||||| |||||||| | |
|
|
| T |
8469574 |
aggagtggggtttgttcagactcaattccttgaaatcattctttgttagcgatgagtttgaaaacgtagagtccttcccagaggagagtctgctgccacc |
8469475 |
T |
|
| Q |
435 |
aagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
|| | |||| | |||| | |||| |||||||| || ||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
8469474 |
aactcttacgtatcttaatttgaataattgttcaaagctaagaataatgaacaacaagggttttctccacctca |
8469401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 333 - 508
Target Start/End: Complemental strand, 7585887 - 7585712
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| | ||| || |||||||||| ||||||| | |||| || || |||||||||| | |||||||| |
|
|
| T |
7585887 |
agagcagtggggtttgttccaactcaattctctgagagctttcggtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca |
7585788 |
T |
|
| Q |
433 |
tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
||| |||| || ||| ||| | |||||||| || ||||||||||| ||| | |||||| |||||||||||| |
|
|
| T |
7585787 |
ccaactattcactttctctggttctctaattgttcaaagctaagaataatgaacaaaaagggttttctccacctca |
7585712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 506
Target Start/End: Original strand, 4390932 - 4391102
Alignment:
| Q |
336 |
ggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatca |
435 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||| | || ||||||| ||||||| |||| ||||| |||||||||||| |||| ||| |
|
|
| T |
4390932 |
ggagtggggtttgttccaactcaattctctaaaagatttcattgttggtgatgactttgaaaatgtggagtccttcccagaggagagtctgctaccagat |
4391031 |
T |
|
| Q |
436 |
agtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacct |
506 |
Q |
| |
|
| |||| ||||||| |||| | | ||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4391032 |
aatattgactctcttagcttgagagaatgttcaaagttaagaataataaactgcaagggtcttctccacct |
4391102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 500
Target Start/End: Complemental strand, 5278719 - 5278511
Alignment:
| Q |
292 |
agcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgatt |
391 |
Q |
| |
|
|||||||||||| | | ||||||| | |||| || |||| | ||||||||||||||||| |||| || ||||||||| | ||| | |||||||||| | |
|
|
| T |
5278719 |
agcctccgaataaacaaatgccctgaactgattgcatcaagaaaggagtggggtttgttcgaactaaattctctgaaagagttcagagttagtgatgact |
5278620 |
T |
|
| Q |
392 |
ttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaa |
491 |
Q |
| |
|
|||||| | |||| ||||| || ||||||| | | ||||| ||| | ||| | || || | ||| ||||||||| || ||||||||||| |||| ||| |
|
|
| T |
5278619 |
ttgaaagcatggactccttcccggaggagaatctactgcccccaactcttaacactattcatttggaaaattgttcaaagctaagaataatcaactccaa |
5278520 |
T |
|
| Q |
492 |
gggtcttct |
500 |
Q |
| |
|
||||||||| |
|
|
| T |
5278519 |
gggtcttct |
5278511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 500
Target Start/End: Complemental strand, 5261951 - 5261784
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| ||||| ||||||| || ||||| | |||| || || || ||||||| | | |||||| |
|
|
| T |
5261951 |
agaggagtggggtttgttcgaactcaattctctgaaagaattcaaagttagtgacgactttgagaatgtggagtctttcccggaggagaatctactgcca |
5261852 |
T |
|
| Q |
433 |
tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttct |
500 |
Q |
| |
|
||| | ||| |||||| ||| ||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5261851 |
ccaactcttaagtctcttcgtttggaaaattgttcaaagctaagaataataaactacaagggtcttct |
5261784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 508
Target Start/End: Original strand, 6450864 - 6450986
Alignment:
| Q |
386 |
atgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaa |
485 |
Q |
| |
|
|||| ||||||| | |||| ||||| || ||||||| | |||||||| ||| | || || | ||| | |||| |||||||| |||||||||||||| || |
|
|
| T |
6450864 |
atgactttgaaaacgtggagtccttccccgaggagaatctgctgccaccaactcttcccacccttcaattgaataattgttcaaacctaagaataatgaa |
6450963 |
T |
|
| Q |
486 |
ctacaagggtcttctccacctca |
508 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
6450964 |
ctacaagggttttctccacctca |
6450986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 508
Target Start/End: Original strand, 6782339 - 6782520
Alignment:
| Q |
327 |
ttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatg |
426 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || ||||| |||| | ||| |||||| ||||||| | |||| ||||| |||||||||| | | |
|
|
| T |
6782339 |
ttcaagagaggagtggggtttgttccaactcaattccttgaaatctttctttgttactgatgagtttgaaaacgtggagtccttcccagaggagaatcta |
6782438 |
T |
|
| Q |
427 |
ctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
|| ||||||| || ||||| | || ||||||||| || ||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
6782439 |
ctaccatcaacccttgagactctttatgtggaaaattgttcaaagctaagaataatgaacaacaagggttttctccacctca |
6782520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 432
Target Start/End: Complemental strand, 6945290 - 6945185
Alignment:
| Q |
327 |
ttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatg |
426 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| | ||||| | |||||||||| ||||||| | |||| || || |||||||||| | || |
|
|
| T |
6945290 |
ttcaagagaggagtggggtttgttccaactcaattctctcattgaattcgttgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctg |
6945191 |
T |
|
| Q |
427 |
ctgcca |
432 |
Q |
| |
|
|||||| |
|
|
| T |
6945190 |
ctgcca |
6945185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 508
Target Start/End: Original strand, 6730866 - 6730914
Alignment:
| Q |
460 |
aattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
6730866 |
aattgttcaaacctaagaataatgaactacaagggttttctccacctca |
6730914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 508
Target Start/End: Original strand, 8570804 - 8571140
Alignment:
| Q |
172 |
tggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgttttttgggaggc |
271 |
Q |
| |
|
|||||||| || |||||||||||| | | |||||||||||||||||| ||| ||| | ||||| |||||||||| ||||||||| ||| || | |
|
|
| T |
8570804 |
tggcactcctcctccttgccttttaccccacacttgttcaccaatcttcattatctagagttgtccgattgtccacagctggaatcatttccaaggggag |
8570903 |
T |
|
| Q |
272 |
agttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaaca |
371 |
Q |
| |
|
|| ||||||||| | ||| || |||| ||| ||||| || || || | ||||| |||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
8570904 |
gtttgccttccaacttgagcaaacttgtaatacaaaattgcccaaaattaattggttcaagagaggattggggtttgttccaacttaactctctgaaatc |
8571003 |
T |
|
| Q |
372 |
attctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaac |
471 |
Q |
| |
|
||| | || |||||| ||| ||| |||||||||| |||||||||||| |||||||| ||| | || | ||||| ||| |||||||| || |
|
|
| T |
8571004 |
atttagagttgttgatgactttaaaaatgtggaatccttcccagaggagagtttgctgccaccaactcttcacactctttgtttgtataattgttcaaag |
8571103 |
T |
|
| Q |
472 |
ctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8571104 |
ctaagaataatgaactacaagggacttctccacctca |
8571140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 508
Target Start/End: Complemental strand, 8587932 - 8587764
Alignment:
| Q |
340 |
tggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagta |
439 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||| |||||||||| ||||||| | |||| ||||| |||||||||| | | |||||| ||| | |
|
|
| T |
8587932 |
tggggtttgttccaactcaattctctaaaatctttcaaagttagtgatgagtttgaaaacgtggagtccttcccagaggagaatcttctgccaccaactc |
8587833 |
T |
|
| Q |
440 |
ttacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
|| ||| || |||| |||||||| || |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
8587832 |
ttgagtctatttggttgtttaattgttcaaagctaagaataataaactgcaaaggtcttctccacctca |
8587764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 508
Target Start/End: Original strand, 6523499 - 6523674
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||| | | |||| | |||||||||| ||||||| | |||| || || |||||||||| | |||||||| |
|
|
| T |
6523499 |
agaggagtgggggttgttccaactcaattccttgagatatttctttgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca |
6523598 |
T |
|
| Q |
433 |
tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
||| | | | ||||||| || ||||||| || ||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
6523599 |
ccaactctggacactcttgatttatatgattgttcaaagctaagaataatgaacaacaagggttttctccacctca |
6523674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 432
Target Start/End: Original strand, 6841584 - 6841683
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||| || |||||||||| ||||||| | |||| || || |||||||||| | |||||||| |
|
|
| T |
6841584 |
agaggagtggggtttgttccaactcaattccttgaaatggttcagtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca |
6841683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 6942113 - 6942024
Alignment:
| Q |
172 |
tggcactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgt-tgtacgattgtccatggctggaatcgttt |
261 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||| || ||| ||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
6942113 |
tggcactcctcctccttgcctttttcactacacttgttcaccaaacttcattatct-gtatctgtacgattgtccagagctggaatcgttt |
6942024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 506
Target Start/End: Complemental strand, 5265955 - 5265922
Alignment:
| Q |
473 |
taagaataataaactacaagggtcttctccacct |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5265955 |
taagaataataaactacaagggtcttctccacct |
5265922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 5262100 - 5262040
Alignment:
| Q |
184 |
tccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtc |
244 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
5262100 |
tccttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc |
5262040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 5296771 - 5296663
Alignment:
| Q |
320 |
tgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagga |
419 |
Q |
| |
|
|||| ||||| | |||| ||||||| |||||||||||||| ||||||||| ||||| | |||| ||||| ||||||| | |||| || || || ||||| |
|
|
| T |
5296771 |
tgatagcttcgagagagaagtgggggttgttccaactcaattctctgaaagaattcattgttagcgatgactttgaaaacatggagtcattcccggagga |
5296672 |
T |
|
| Q |
420 |
gagtatgct |
428 |
Q |
| |
|
|||| |||| |
|
|
| T |
5296671 |
gagtttgct |
5296663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 8452610 - 8452487
Alignment:
| Q |
383 |
gtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataat |
482 |
Q |
| |
|
||||||||||||||| | |||| ||||||||| |||||||| |||||||| ||| | || | | |||| | |||| || ||||| || || |||||||| |
|
|
| T |
8452610 |
gtgatgattttgaaaacgtggagtcctttccaaaggagagtctgctgccaccaactctttcgtatcttaatttgaataactgttcaaagctcagaataat |
8452511 |
T |
|
| Q |
483 |
aaactacaagggtcttctccacct |
506 |
Q |
| |
|
||| || ||||| |||||||||| |
|
|
| T |
8452510 |
gaacaacgagggttttctccacct |
8452487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 506
Target Start/End: Complemental strand, 5248050 - 5248017
Alignment:
| Q |
473 |
taagaataataaactacaagggtcttctccacct |
506 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
5248050 |
taagaataataaacttcaagggtcttctccacct |
5248017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 507
Target Start/End: Original strand, 6482129 - 6482173
Alignment:
| Q |
463 |
tgttccaacctaagaataataaactacaagggtcttctccacctc |
507 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
6482129 |
tgttcaaagctaagaataatgaactacaagggttttctccacctc |
6482173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 13521 - 13608
Alignment:
| Q |
304 |
gaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgatt |
391 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
13521 |
gaaagatgtcctaaattgatggcttcaagagaggagtggggtttgttccaactcaattctctgaaacaattcagtgttagtgatgatt |
13608 |
T |
|
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Target: scaffold0425; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 446 - 533
Target Start/End: Original strand, 13621 - 13708
Alignment:
| Q |
446 |
ctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga |
533 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
13621 |
ctcttgagttgaaaaattgttccaatctaggaataataaactacaagggtcttctctacctcactttgcttgaatctctatatattga |
13708 |
T |
|
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Target: scaffold0425; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 9630 - 9707
Alignment:
| Q |
184 |
tccttgccttttgcactacacttgttcaccaatctaaattctctcgtgt-tgtacgattgtccatggctggaatcgttt |
261 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||| ||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
9630 |
tccttgcctttggaactacacttgttcaccaatcttaattatct-gtatctgtacgattgtccagagctggaatcgttt |
9707 |
T |
|
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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 508
Target Start/End: Original strand, 6575469 - 6575514
Alignment:
| Q |
463 |
tgttccaacctaagaataataaactacaagggtcttctccacctca |
508 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6575469 |
tgttcaaagctaagaataatgaactacaagggtcttctccacctca |
6575514 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 6575193 - 6575234
Alignment:
| Q |
187 |
ttgccttttgcactacacttgttcaccaatctaaattctctc |
228 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
6575193 |
ttgcctttttcactacacttgttcaccaatcttgattctctc |
6575234 |
T |
|
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Target: scaffold1643 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 186 - 87
Alignment:
| Q |
333 |
agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca |
432 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| | ||||| |||||||||| ||||||| | |||| || || |||||||||| | |||||||| |
|
|
| T |
186 |
agaggagtggagtttgttccaactcaattctctgtatcaatttgaagttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca |
87 |
T |
|
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Target: scaffold0958 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 1653 - 1738
Alignment:
| Q |
175 |
cactcttcttccttgccttttgcactacacttgttcaccaatctaaattctctcgtgttgtacgattgtccatggctggaatcgtt |
260 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||||| |||| ||| ||| | ||| | ||||||||||| ||||||||||| |
|
|
| T |
1653 |
cactcttcctccttgccttttacgctacacttgttcacaaatcatcattatctagagttttccgattgtccataactggaatcgtt |
1738 |
T |
|
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