View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_high_9 (Length: 435)
Name: NF19337_high_9
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 102 - 359
Target Start/End: Original strand, 22563120 - 22563377
Alignment:
| Q |
102 |
cattcaacaaattcttttgagctattatttggtttactacattagttgcaccaagctgaagtgttttctgataatgaactatatatcatttttgtttact |
201 |
Q |
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| T |
22563120 |
cattccacaaattcttttgagctattatttggtttactacattagttgcaccaagctgaagtgttttctgataatgaactatatatcatttttgtttact |
22563219 |
T |
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| Q |
202 |
ccttatgacctgaaatcttttgtaatatttggattctattttcattagcaaaattagattccaccattgttnnnnnnnntatgataaaatcttctgcatt |
301 |
Q |
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| T |
22563220 |
ccttatgacctgaaatcttttgtaatatttggattctatcttcattagcaaaattagattgcaccattgttaaaaaaaaaatgataaaatcttctgcatt |
22563319 |
T |
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| Q |
302 |
caattcatttttaataacaaaaccagttattacataattaaataggctaggtaaagtt |
359 |
Q |
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| T |
22563320 |
caattcatttttaataacaaaaccagttattacataattaaataggctaggtaaagtt |
22563377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 22562942 - 22563038
Alignment:
| Q |
18 |
acaaaaacctcattgttaagtaatgggactttgttaatgcgacttcgttaattttcttctgctaaactgattttcaaggtgcgtcattcaacaaatt |
114 |
Q |
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| T |
22562942 |
acaaaaacctcattgttaagtaatgggactttgttaatgcgacttcgttaattttcttctgctaaactgattttcaaggtgcgtcatttaactaatt |
22563038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 22563519 - 22563601
Alignment:
| Q |
341 |
aaataggctaggtaaagttaaccctaaaatttattatgcatattttcctcatgaaatcactctatgacactcaatcctatatt |
423 |
Q |
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| T |
22563519 |
aaataggctaggtaaagttaaccctaaaatttattatgcatattttcctcatgaaatcactctatgacactcaatcctatatt |
22563601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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