View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_11 (Length: 364)
Name: NF19337_low_11
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 14145147 - 14145396
Alignment:
| Q |
1 |
tgcatcgttatatttttgaaattctagaacgagagttttttcgagaaaatagattgtcatgtgagtagtggttttcgagtgttcatatagttttaaaata |
100 |
Q |
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| T |
14145147 |
tgcatcgttatatttttgaaattctagaacgagagttttttcgagaaaatagattgtcatgtgagtagtggttttcgagtgttcatatagttttaaaata |
14145246 |
T |
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| Q |
101 |
ttctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactc |
200 |
Q |
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| T |
14145247 |
ttctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactc |
14145346 |
T |
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| Q |
201 |
aatcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
250 |
Q |
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| T |
14145347 |
aatcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
14145396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 14145437 - 14145510
Alignment:
| Q |
291 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgatgtttaaagttctttgttaaagtgtt |
364 |
Q |
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| T |
14145437 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgttgtttaaagttctttgttaaagtgtt |
14145510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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