View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19337_low_14 (Length: 277)

Name: NF19337_low_14
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19337_low_14
NF19337_low_14
[»] chr4 (4 HSPs)
chr4 (11-277)||(55118692-55118971)
chr4 (87-132)||(11932015-11932060)
chr4 (83-122)||(52792010-52792049)
chr4 (82-132)||(6948205-6948255)
[»] chr7 (9 HSPs)
chr7 (184-277)||(37580881-37580974)
chr7 (13-158)||(37557441-37557583)
chr7 (66-163)||(37564383-37564480)
chr7 (83-131)||(37580684-37580732)
chr7 (82-131)||(37525818-37525867)
chr7 (221-277)||(6778617-6778673)
chr7 (86-132)||(37540501-37540547)
chr7 (82-131)||(37535367-37535416)
chr7 (221-277)||(37476245-37476301)
[»] chr8 (4 HSPs)
chr8 (83-132)||(24406504-24406553)
chr8 (83-132)||(24412655-24412704)
chr8 (91-128)||(37363019-37363056)
chr8 (88-132)||(24817213-24817257)
[»] chr5 (4 HSPs)
chr5 (83-131)||(35390547-35390595)
chr5 (85-132)||(8981939-8981986)
chr5 (83-125)||(8991442-8991484)
chr5 (83-125)||(36686937-36686979)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 55118692 - 55118971
Alignment:
Q  11 cacagacaatcaagcacatgatcaagaagaatagtggcagcgacaatgaaatcgttattctgaacgttaagggcaagatcttggcgaaggttattgaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55118692 cacagacaatcaagcacatgatcaagaagaatagtggcagcgacaatgaaatcgttattctgaacgttaagggcaagatcttgacgaaggttattgaata 55118791  T
Q  111 ttgtaagaag-------------catgtggaggctcgttgggaagctgaattcgttaaggttgatcgtaaggttaagaagcatgtcgatgatctcaaggc 197  Q
     |||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55118792 ctgtaagaagcatgtggaggaagcatgtggaggctcgttgggaagctgaattcgttaaggttgatcgtaaggttaagaagcgtgtcgatgatctcaaggc 55118891  T
Q  198 ttgggacactgaattcatgaagcaggttgatcaggatacccttaacgatctccttctagctgcaaattacttgaacatca 277  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55118892 ttgggacgctgaattcatgaagcaggttgatcaggatacccttaacgatctccttctagctgcaatttacttgaacatca 55118971  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 11932060 - 11932015
Alignment:
Q  87 gatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  11932060 gatcttggcgaaggttattgagtattgcaagaagcatgttgaggct 11932015  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 52792049 - 52792010
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagca 122  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  52792049 gcaagatcttgacgaaggttattgagtattgtaagaagca 52792010  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 6948255 - 6948205
Alignment:
Q  82 ggcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  6948255 ggcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggct 6948205  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 37580881 - 37580974
Alignment:
Q  184 gatgatctcaaggcttgggacactgaattcatgaagcaggttgatcaggatacccttaacgatctccttctagctgcaaattacttgaacatca 277  Q
    |||||||| |||||||||||| |||||||||||||||| |||||||||| ||  |||  ||| ||| ||| |||||||||||||||||||||||    
T  37580881 gatgatcttaaggcttgggacgctgaattcatgaagcatgttgatcaggctatgcttttcgaactcattcaagctgcaaattacttgaacatca 37580974  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 37557441 - 37557583
Alignment:
Q  13 cagacaatcaagcacatgatcaagaagaatagtggcagcgacaatgaaatcgttattctgaacgttaagggcaagatcttggcgaaggttattgaatatt 112  Q
    ||||||||||||| ||||||  || ||||| | ||||   |||| || ||| ||||||||||||| ||| ||||||| ||||||| ||| |||||||| |    
T  37557441 cagacaatcaagcgcatgatggaggagaattgcggca---acaacgatatccttattctgaacgtgaagagcaagatattggcgatggtgattgaatact 37557537  T
Q  113 gtaagaagcatgtggaggctcgttgggaagctgaattcgttaaggt 158  Q
    |||||| |||||| ||||||  || |||  ||||||||||||||||    
T  37557538 gtaagatgcatgtcgaggctgatttggattctgaattcgttaaggt 37557583  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 37564383 - 37564480
Alignment:
Q  66 tattctgaacgttaagggcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggctcgttgggaagctgaattcgttaaggttgatc 163  Q
    |||||| ||||| ||| ||||||| ||||| ||||| | |||||| ||||||| |||||| |||||  ||| ||| |||||||||||||| |||||||    
T  37564383 tattcttaacgtgaagagcaagatattggcaaaggtgactgaatactgtaagatgcatgtcgaggccagtttggatgctgaattcgttaatgttgatc 37564480  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 37580684 - 37580732
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggc 131  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  37580684 gcaagatcctggcaaaggttattgaatactgtaagaagcatgtggaggc 37580732  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 37525867 - 37525818
Alignment:
Q  82 ggcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggc 131  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| |||||    
T  37525867 ggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggc 37525818  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 6778617 - 6778673
Alignment:
Q  221 aggttgatcaggatacccttaacgatctccttctagctgcaaattacttgaacatca 277  Q
    |||||||||||||||| |||  ||||||| |||| ||||||||||||||||| ||||    
T  6778617 aggttgatcaggatacacttttcgatctcattcttgctgcaaattacttgaatatca 6778673  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 37540501 - 37540547
Alignment:
Q  86 agatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||||    
T  37540501 agatattggcgaaggtgattgaataatgtaagaagcatgtcgaggct 37540547  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 37535367 - 37535416
Alignment:
Q  82 ggcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggc 131  Q
    |||||||| ||||| ||||| |||||||| |||||||||||||| |||||    
T  37535367 ggcaagatattggcaaaggtgattgaatactgtaagaagcatgtcgaggc 37535416  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 37476301 - 37476245
Alignment:
Q  221 aggttgatcaggatacccttaacgatctccttctagctgcaaattacttgaacatca 277  Q
    |||||||||||||||  |||  ||||||| |||| ||||||||||||||||| ||||    
T  37476301 aggttgatcaggataaacttttcgatctcattcttgctgcaaattacttgaatatca 37476245  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 24406553 - 24406504
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    ||||||||||||| |||||||| || ||||||||||||||||| ||||||    
T  24406553 gcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggct 24406504  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 24412655 - 24412704
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    ||||||||||| | |||||||| || ||||||||||||||||| ||||||    
T  24412655 gcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggct 24412704  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 37363056 - 37363019
Alignment:
Q  91 ttggcgaaggttattgaatattgtaagaagcatgtgga 128  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  37363056 ttggcgaaggtgattgaatactgtaagaagcatgtgga 37363019  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 24817213 - 24817257
Alignment:
Q  88 atcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  24817213 atcttggcgaaagttattgagtattgcaagaagcatgttgaggct 24817257  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 35390595 - 35390547
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgtggaggc 131  Q
    |||| |||||||||||||||||||| |||||||| |||||||| |||||    
T  35390595 gcaacatcttggcgaaggttattgagtattgtaaaaagcatgttgaggc 35390547  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 8981939 - 8981986
Alignment:
Q  85 aagatcttggcgaaggttattgaatattgtaagaagcatgtggaggct 132  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| ||||||    
T  8981939 aagatcttggcgaaggtgattgagtattgcaagaagcatgttgaggct 8981986  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 8991442 - 8991484
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgt 125  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||    
T  8991442 gcaagatcttggcgaaggtgattgagtattgcaagaagcatgt 8991484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 36686979 - 36686937
Alignment:
Q  83 gcaagatcttggcgaaggttattgaatattgtaagaagcatgt 125  Q
    |||| |||||||| |||||||||||||||||||| ||||||||    
T  36686979 gcaacatcttggcaaaggttattgaatattgtaaaaagcatgt 36686937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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