View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_19 (Length: 251)
Name: NF19337_low_19
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 5936150 - 5935938
Alignment:
| Q |
10 |
agatgaaattggtttacaaataggacatagtgaaaaaacataaattagtgaggaaaacgtgaaatctgtctcaaattttgtctctaattttgtgatgagg |
109 |
Q |
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| T |
5936150 |
agatgaaattggtttacaaataggacatagtgaaaaaacataaattagtgagaaaaacgtgaaatctctctcaaattttgtctctaattttgtgacgagg |
5936051 |
T |
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| Q |
110 |
gaattggacatgaatttcannnnnnnncggttgttaattttacatttggattagtttgtgacaaaaaattcacaaaataattgtttcgtacnnnnnnntg |
209 |
Q |
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| T |
5936050 |
gaattggacatgaatttcatttttttc--gttgttaattttacatttggattggtttgtg-----------acaaaataattgtttcgtacaaaaaaatg |
5935964 |
T |
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| Q |
210 |
acacatgattgaaatgaggttgataa |
235 |
Q |
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| T |
5935963 |
acacatgattgaaatgaggttgataa |
5935938 |
T |
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