View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_21 (Length: 245)
Name: NF19337_low_21
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14145488 - 14145716
Alignment:
| Q |
1 |
ttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatgtgaaggnnnnnnnnttgtaattgaatcatgatgannnnnnnngcgattttg |
100 |
Q |
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| T |
14145488 |
ttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatgtgaaggaaaaaaa-ttgtaattgaatcatgatgattttttttgcgattttg |
14145586 |
T |
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| Q |
101 |
aaaatatttcaaaaatatgctttaaacggttagatatttatttaatcggttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14145587 |
aaaatatttcaaaaatatgctttaaacggttagatatttatttaaccggttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaa |
14145686 |
T |
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| Q |
201 |
gtgaaaagtggtaaattttcgtggtgtttc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14145687 |
gtgaaaagtggtaaattttcgtggtgtttc |
14145716 |
T |
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