View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_22 (Length: 238)
Name: NF19337_low_22
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39245408 - 39245632
Alignment:
| Q |
1 |
cattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatc |
100 |
Q |
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| T |
39245408 |
cattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatc |
39245507 |
T |
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| Q |
101 |
ccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245508 |
ccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaa |
39245607 |
T |
|
| Q |
201 |
aggaaagtttttgagacttctcttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
39245608 |
aggaaagtttttgagacttctcttt |
39245632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 39251420 - 39251635
Alignment:
| Q |
9 |
ttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataacc |
108 |
Q |
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||||||| ||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39251420 |
ttaaagggcttccagaaggtaatctatgtctataaagtggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaagatggttggaatcccataacc |
39251519 |
T |
|
| Q |
109 |
aagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaaaggaaagt |
208 |
Q |
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| T |
39251520 |
aagggc-aaaccaacattgtcttgtatgtagactaatcctgtttcggctaaaatgcctccagttataatgcagaacacccaccaattgaaaaaggaaagt |
39251618 |
T |
|
| Q |
209 |
ttttgagacttctcttt |
225 |
Q |
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||||| ||| ||||||| |
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| T |
39251619 |
ttttgggacctctcttt |
39251635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39261004 - 39261228
Alignment:
| Q |
1 |
cattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||| ||||||| ||| || || |||| |||||||||| | |||| |||||||||||||||||||||| |
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| T |
39261004 |
cattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatatggttggaatc |
39261103 |
T |
|
| Q |
101 |
ccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| |||||||| |||||| ||||||||||||||||| | |
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| T |
39261104 |
ccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaattaaaatgtaaaacacccaccaattgtaga |
39261203 |
T |
|
| Q |
201 |
aggaaagtttttgagacttctcttt |
225 |
Q |
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| T |
39261204 |
atgaaagtttttgggacctctcttt |
39261228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 39239604 - 39239722
Alignment:
| Q |
20 |
cctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaac |
119 |
Q |
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|||| ||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| |||| |||||||||| ||||| ||||| | ||| |
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| T |
39239604 |
cctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgcaaggccaatggttggaaggccatatccaagttcccaac |
39239703 |
T |
|
| Q |
120 |
caacattgtcttgtatgta |
138 |
Q |
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||| ||||||||||||||| |
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| T |
39239704 |
caatattgtcttgtatgta |
39239722 |
T |
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