View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_25 (Length: 204)
Name: NF19337_low_25
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 4535812 - 4535904
Alignment:
| Q |
96 |
aagcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaagctgagtaat |
188 |
Q |
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| T |
4535812 |
aagcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaagctgagtaat |
4535904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 4535009 - 4535079
Alignment:
| Q |
18 |
acaaaagatataatctgttttacagacagggtatcttcatttggtctaaaattaataaatgaaggataaag |
88 |
Q |
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| T |
4535009 |
acaaaagatataatctgttttacagagagagtatcttcatttggtctaaaattaataaatgaatgataaag |
4535079 |
T |
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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 4527531 - 4527440
Alignment:
| Q |
97 |
agcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaagctgagtaat |
188 |
Q |
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| T |
4527531 |
agcgtgaattggttaaacacaaaaccattttaaaataaacacaccttaaaatcaataccacaagaaaaattctagattttaagctgagtaat |
4527440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 4292712 - 4292644
Alignment:
| Q |
110 |
taaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaa |
178 |
Q |
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| T |
4292712 |
taaacacaaaaacattttaaaatccacacacccaaaaatcaagaccacatgagaaattctagatgttaa |
4292644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 4526065 - 4526153
Alignment:
| Q |
97 |
agcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaagctgagtaat |
188 |
Q |
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| T |
4526065 |
agcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatcaagaccggatgagaaattatagattttaagcttagtaat |
4526153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 4537184 - 4537098
Alignment:
| Q |
100 |
gtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagattttaagctgagtaat |
188 |
Q |
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| T |
4537184 |
gtgaattggttaaacacaaa--cattttaaaatccacacacccaaaaatcaatactgcaagataaattctatattttaaacttagtaat |
4537098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 19411586 - 19411514
Alignment:
| Q |
100 |
gtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctaga |
172 |
Q |
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| T |
19411586 |
gtgaatgggttaaacacaaatacatattaaaatccacacatccaaaaaataataccacaagagaaattgtaga |
19411514 |
T |
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