View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_3 (Length: 482)
Name: NF19337_low_3
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 79 - 437
Target Start/End: Complemental strand, 47477857 - 47477495
Alignment:
| Q |
79 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaactaatcatgcattcagt |
178 |
Q |
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| T |
47477857 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaattaatcatgcattcagt |
47477758 |
T |
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| Q |
179 |
aaaggcatcacnnnnnnngacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaag |
278 |
Q |
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| T |
47477757 |
aaaggcatcactttttttgacaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggtatatacatattaataataactacaag |
47477658 |
T |
|
| Q |
279 |
aattggtactttgccaagaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaattagtaacatttatcattnnnnnnnn |
378 |
Q |
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| T |
47477657 |
aattggtactttgccaagaggtcctgggtttaaatctggacagacgagtaaatagtaatctcacaactaactaactagtaacatttatcattaaaaaaaa |
47477558 |
T |
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| Q |
379 |
tgccaagaatttcttttatgttctaaatttaataccgcaattg----ttatgccaatttgagc |
437 |
Q |
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| T |
47477557 |
tgccaagaatttcttttatgttctaaatttaataccgcaattgaaacttatgccaatttgagc |
47477495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 47487012 - 47486857
Alignment:
| Q |
98 |
gggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaactaatcatgcattcagtaaaggcatcacnnnnnnng |
197 |
Q |
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| T |
47487012 |
gggtgtatgggactcggtggagcctacagtgatcttcttcctgagcaagatggtatttccataattaagtatgcatttagtaaaggcatcactttatttg |
47486913 |
T |
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| Q |
198 |
acaccgctgatgtttatggactcgatggtgggaatgaaattttggttggaaaggta |
253 |
Q |
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| T |
47486912 |
atactgctgatgtttatggagtcgatggtggtaatgaaatattggttggaaaggta |
47486857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 47474365 - 47474260
Alignment:
| Q |
79 |
ggtttcaaagttcggtttagggtgtatggccctcagtggaggatacaatgatcctcttcctgaagaaattggcatttccgtaactaatcatgcattcagt |
178 |
Q |
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||||||||| || ||||| |||||||||| |||| ||||| ||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||| |
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| T |
47474365 |
ggtttcaaaattgggtttcgggtgtatgggactcactggagcttacaatgatcctcttcctgaacaagatggtatttccgtaattaactatgctttcagt |
47474266 |
T |
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| Q |
179 |
aaaggc |
184 |
Q |
| |
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|||||| |
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| T |
47474265 |
aaaggc |
47474260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 2097125 - 2097181
Alignment:
| Q |
296 |
gaggtcctgggtttaaatccggacagacgagtaaatagtaatctcacaactaactaa |
352 |
Q |
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||||||||||||| ||| ||||||| ||||||||| |||||| |||||||||||| |
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| T |
2097125 |
gaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaactaactaa |
2097181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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