View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_4 (Length: 470)
Name: NF19337_low_4
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 29611126 - 29610690
Alignment:
| Q |
13 |
aaaatgtctcgcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataaagatgactatggatactaattttctataaa |
112 |
Q |
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| T |
29611126 |
aaaatgtctcgcgcaagcaatagctttgttcctgaagtactaattagatatatgaaagtgattttgataacgatgactatggatactaattttctataaa |
29611027 |
T |
|
| Q |
113 |
ttgttgttaaaatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
29611026 |
ttgttgttaaaatatttaatttcataaccaatggcatctgcctacttacctcccagccaaaaatgggtagccctttcgataatgttctggaggttggcct |
29610927 |
T |
|
| Q |
213 |
tgcaatcctgaaacataagaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctatt |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29610926 |
tgcaatcctgaaacataagaagtcatattttggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctatt |
29610827 |
T |
|
| Q |
313 |
cattcacatatacaagtgagttttacatctggaagttcatctattttctatagaaagaaatttaaagtatagcgagttcaataacaaattcaaaagttgc |
412 |
Q |
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| T |
29610826 |
cattcacatatgcaagtgagttttacatctggaagttcatctattttttatagaaataaatttaaagtatagcgagttcaataacaaattcaaaagttgc |
29610727 |
T |
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| Q |
413 |
cttacagatacactaggagctaaagtatagtgagttc |
449 |
Q |
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| T |
29610726 |
cttacagatacactaggggctaaagtatagtgagttc |
29610690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 159 - 323
Target Start/End: Original strand, 29583221 - 29583385
Alignment:
| Q |
159 |
tacctcccagccaaaaatgggtagccctttggatgatgttctggaggttggccttgcaatcctgaaacataagaagtcatatttcggacaatttcggtgt |
258 |
Q |
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||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
29583221 |
tacctcccagccacaaatgggtaaccccttggatgtctttctggaggttggccttgcaaacctgaaacataagaagtcatatttcggacaatttcagtgt |
29583320 |
T |
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| Q |
259 |
cttcgctgtaactctcatagcatctaccccatctaggatctttgcagacctattcattcacatat |
323 |
Q |
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| T |
29583321 |
cttcgctgtaactctcatagcatcttccccatctgggatctttgcagacctgtccattcacatat |
29583385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 25128579 - 25128657
Alignment:
| Q |
231 |
gaagtcatatttcggacaatttcggtgtcttcgctgtaactctcatagcatctaccccatctaggatctttgcagacct |
309 |
Q |
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|||||||| |||||||| ||||| |||||||| || |||| |||||||||||| ||||| |||||||||||||| |||| |
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| T |
25128579 |
gaagtcatctttcggactatttcagtgtcttcactataacactcatagcatcttccccacctaggatctttgcatacct |
25128657 |
T |
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