View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19337_low_5 (Length: 466)
Name: NF19337_low_5
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 29 - 447
Target Start/End: Complemental strand, 49086045 - 49085623
Alignment:
| Q |
29 |
ggcacagaaataatgtaagaacggacgaaatcattcctgcaaatgcaattcttccagctaaaagcaggatcttggcctcatcgttattagacataagcat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49086045 |
ggcacagaaataatgtaagaacggacgaaatcattcctgcaaatgcaattcttccagctaaaagcaggatcttggcttcatcgttattagacataagcat |
49085946 |
T |
|
| Q |
129 |
actagttaaaccacagccctaacaagtaagatttaca----cgaggtacaataaaaaattcaaatcaatcactacataataattacaatcctaaatttgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49085945 |
gctagttaaaccacagccctaacaagtaagatttaaataaacgaggtacaataaaaaattcaaatcaatcactacataataattacaatcctaaatttgt |
49085846 |
T |
|
| Q |
225 |
aggagacagtcaatgagtcaatataattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttgatttcactagacctacactacag |
324 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49085845 |
aggagacagtcaatgagtcaatgtaattaacaaacaagccgacagaaagcactaaaaatgctattaaaaacaatttgatttcactagacctacactacag |
49085746 |
T |
|
| Q |
325 |
ttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatctcagtagcctctggtttcagcta |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49085745 |
ttaaccattgttgagtcaaattagtgttcaagtcagactgtaaatcaataatgaaggtaacttgaaacaaaacaatctcagtagcctctggtttcagcta |
49085646 |
T |
|
| Q |
425 |
ctggaacttcaccctgtacttgg |
447 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
49085645 |
ccggaacttcaccctgtacttgg |
49085623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University