View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19337_low_6 (Length: 455)
Name: NF19337_low_6
Description: NF19337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19337_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 47968308 - 47967876
Alignment:
| Q |
17 |
atataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtgnnnnnnnnnnnng |
116 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47968308 |
atataacatctgtcatcattaggatgccttccctattttcgtttcttttgtacaacatgtttttccgttaatatttctaacatggtgttttgcttctttt |
47968209 |
T |
|
| Q |
117 |
----gtaggacctttgagccgtaacccatccacaaaattttacagaactatcaaccgccatcgtttgaagtataggatgtacaccatagattgggatgtt |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47968208 |
ttttgtaggacctttgagccgtaacccatccacataattttacagaactatcaaccgccttcgtttgaagtataggatgtacaccatagattgggatgtt |
47968109 |
T |
|
| Q |
213 |
gatcgtgtgggttttcaaatgtttcgattttaaaatttctgnnnnnnnnnnnnnnnna---atggttagttttatgacaatgtttatttaaatacgtaat |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47968108 |
gattgtgtgggttttcaaatgtttcgattttaaaatttctgttttttgattttttttttttatggttagttttatgacaatgtttatttaaatacgtaat |
47968009 |
T |
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| Q |
310 |
ggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttgtcttatc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47968008 |
ggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctgtgaagaagtttgtcttatc |
47967909 |
T |
|
| Q |
410 |
cgacccaaaatccagtttctgtagctcctccct |
442 |
Q |
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| T |
47967908 |
cgacccaaaatccagtttctgtagctcctccct |
47967876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 11300395 - 11300156
Alignment:
| Q |
17 |
atataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtgnnnnnnnnnnnng |
116 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11300395 |
atataacatacgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtgttttgctttttat |
11300296 |
T |
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| Q |
117 |
---gtaggacctttgagccgtaacccatccacaaaattttacagaactatcaaccgccatcgtttgaagtataggatgtacaccatagattgggatgttg |
213 |
Q |
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||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||| || |||| |
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| T |
11300295 |
tttgtaggacttttgagctgtaacccatccacagaattttacagaactatcaaccgccttcgtttgtagtacaggacgtacaccatagattgcgaagttg |
11300196 |
T |
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| Q |
214 |
atcgtgtgggttttcaaatgtttcgattttaaaatttctg |
253 |
Q |
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| T |
11300195 |
attgtgtgggttttcagatgtttcgattttaaaatttctg |
11300156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 37337777 - 37338016
Alignment:
| Q |
17 |
atataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtgnnnnnnnnnnnng |
116 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37337777 |
atataacatctgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggttttttgctttttat |
37337876 |
T |
|
| Q |
117 |
---gtaggacctttgagccgtaacccatccacaaaattttacagaactatcaaccgccatcgtttgaagtataggatgtacaccatagattgggatgttg |
213 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||| || |||| |
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| T |
37337877 |
tttgtaggaccattgagccgtaacccatccacataattttacagaactatcaactgcctttgtttgaagtataggacgtacaccatagattgtgaagttg |
37337976 |
T |
|
| Q |
214 |
atcgtgtgggttttcaaatgtttcgattttaaaatttctg |
253 |
Q |
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|| ||||||||||||| |||||| ||||||||| |||||| |
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| T |
37337977 |
attgtgtgggttttcagatgttttgattttaaattttctg |
37338016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 303 - 438
Target Start/End: Original strand, 37338096 - 37338231
Alignment:
| Q |
303 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
37338096 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttctgtggaaaagtttgtctgcgaagaagtttg |
37338195 |
T |
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| Q |
403 |
tcttatccgacccaaaatccagtttctgtagctcct |
438 |
Q |
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||||||| |||||||| ||||||||||||||||||| |
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| T |
37338196 |
tcttatctgacccaaagtccagtttctgtagctcct |
37338231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 303 - 442
Target Start/End: Complemental strand, 11300076 - 11299942
Alignment:
| Q |
303 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtctgtgaagaagtttg |
402 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
11300076 |
acgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagtttgtctttgaagaagtttg |
11299977 |
T |
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| Q |
403 |
tcttatccgacccaaaatccagtttctgtagctcctccct |
442 |
Q |
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||| ||||||||||||||||| |||||||||||||| |
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| T |
11299976 |
tct-----gacccaaaatccagtttttgtagctcctccct |
11299942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 15296599 - 15296846
Alignment:
| Q |
17 |
atataacatttgtcatcattaggatgctttccctattttcgtttcttttgtacaacatgtttttccgtgaatatttctaacatggtgnnnnnnnnnnnng |
116 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
15296599 |
atataacatctgtcatcattagaatgctttccctattttcgtttcttttgtacaacatgttttaccctgaatatttctaacatggttttttgctttttat |
15296698 |
T |
|
| Q |
117 |
---gtaggacctttgagccgt--------aacccatccacaaaattttacagaactatcaaccgccatcgtttgaagtataggatgtacaccatagattg |
205 |
Q |
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|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
15296699 |
tttgtaggacctttgagccgtaagcccgtaacccatcaacataattttacagaactatcaaccgccttcgtttgaagtatgggacgtacaccatagattg |
15296798 |
T |
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| Q |
206 |
ggatgttgatcgtgtgggttttcaaatgtttcgattttaaaatttctg |
253 |
Q |
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| T |
15296799 |
cgaagttgattgtctgggttttcagatgtttcgattttaaaatttctg |
15296846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 15296926 - 15297012
Alignment:
| Q |
303 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcaaatttctgtggagaagtttgtct |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
15296926 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttctgtggagaagtttgtct |
15297012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 15297001 - 15297045
Alignment:
| Q |
394 |
agaagtttgtcttatccgacccaaaatccagtttctgtagctcct |
438 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
15297001 |
agaagtttgtcttatctgacccaaagtccagtttctgtagctcct |
15297045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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