View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_high_10 (Length: 219)
Name: NF19338_high_10
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_high_10 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 10675 - 10485
Alignment:
| Q |
14 |
caaaggtttaaaatgaatgtgatgtatgttatggttgaatgctgtaaaaagatgtgaatgtttaagtagtatgatggcaacacaagataagaaaaacttt |
113 |
Q |
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| T |
10675 |
caaaggtttaaaatgaatgtgatgtatgttatggttgaatgctgtaaaaagatgtgaatgtttaagtagtatgatggcaacacaagataagaaaaacttt |
10576 |
T |
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| Q |
114 |
agcttaaactttaaattcttggttcatgggagagttgtctgacatggttttcagatgaattcaacacaagcatactaatcagaaaaagttg |
204 |
Q |
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| T |
10575 |
agcttaaactttaaattcttggttcatgggagagttgtctgacatggttttcagatgaattcaacacaagcatactaatcagaaaaagttg |
10485 |
T |
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Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 24115474 - 24115293
Alignment:
| Q |
14 |
caaaggtttaaaatgaatgtgatgtatgttatggttgaatgctgtaaaaagatgtgaatgtttaagtagt-atgatggcaacacaagataagaaaaactt |
112 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
24115474 |
caaaggtttaaaatgaatgtgctgtatgttgtggttgaatgctgtaaaaagatgtgaatggttaagtagtgatgatggcaacacaagataagaaaatctt |
24115375 |
T |
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| Q |
113 |
tagcttaaactttaaattcttggttcatgggagagttgtctgacatggttttcagatgaattcaacacaagcatactaatca |
194 |
Q |
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| T |
24115374 |
tagcttaaactttaaattcttggttgatgggagagttgtctgacatggttttcagatgaattgaacacaggcatgctaatca |
24115293 |
T |
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