View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_high_2 (Length: 446)
Name: NF19338_high_2
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 6 - 431
Target Start/End: Original strand, 3217461 - 3217886
Alignment:
| Q |
6 |
agaagcaaaggcaaattataccaaatcatactttgcaagaaaataatctgaggtagtagaaaatcagattcatctttatacatagccttcatgagtggaa |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217461 |
agaaacaaaagcaaattataccaaatcatactttgcaagaaaataatctgaggtagtagaaaatcagattcatctttatacatagccttcatgagtggaa |
3217560 |
T |
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| Q |
106 |
ttccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataataacaatcaa |
205 |
Q |
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| T |
3217561 |
ttccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataataacaatcaa |
3217660 |
T |
|
| Q |
206 |
gactaaaaatgcaagaaatttttgaacacaatctgcatatataagtttaagactcattttgtaaatgttatttgaagatatcacttgaaatgataacaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217661 |
gactaaaaatgcaagaaatttttgaacacaatctgcatatataagtttaagactcattttgtaaatgttatttgaagatatcacttgaaatgataacaat |
3217760 |
T |
|
| Q |
306 |
ggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgctagtaacatagtta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217761 |
ggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgctagtaacatagtta |
3217860 |
T |
|
| Q |
406 |
catataatgggacagtggctgttact |
431 |
Q |
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| T |
3217861 |
catataatgggacagtggctgttact |
3217886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 2035734 - 2036136
Alignment:
| Q |
16 |
gcaaattataccaaatcatactttgcaagaaaataatctgaggtagta-gaaaatcagattcatctttatacatagccttcatgagtggaattccaagga |
114 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| || | || ||| || |||||| |||||||| || || | | |||||||||||| | |
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| T |
2035734 |
gcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaat-agcttcatccttatacattgcttttaacaatggaattccaagaa |
2035832 |
T |
|
| Q |
115 |
tcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataataacaatcaagactaaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| | | |||| | ||| |
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| T |
2035833 |
tcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacct---ttaccactaatcttaataattgctgttaagagaacaaa |
2035929 |
T |
|
| Q |
215 |
tgcaagaaatttttgaacacaatctgcatatataagtttaagactcattttgtaaatgttatttgaagatatcacttgaaatgataacaatggaactgaa |
314 |
Q |
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| T |
2035930 |
tgcaagaagtttctgaatgaaatcagaaaacattagttttaggctcattttgtagatattgttggaagaaatgacttgaaatgataaaagagggattgag |
2036029 |
T |
|
| Q |
315 |
aaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgctagtaacatagttacatataatg |
414 |
Q |
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| T |
2036030 |
aattttgcaacaaatttgtttattcctgaacattgttcttgtgtgaagatcttaaaccatttcactgagacataggctagtatcattgttacatataatg |
2036129 |
T |
|
| Q |
415 |
ggacagt |
421 |
Q |
| |
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||||||| |
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| T |
2036130 |
ggacagt |
2036136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 34970841 - 34970770
Alignment:
| Q |
305 |
tggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccattt |
376 |
Q |
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|||||||| |||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||||||| |
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| T |
34970841 |
tggaactgcaaaaagtgctacaaaacggtttatgcctgaacattgatctggtgtgaagattttccaccattt |
34970770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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