View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19338_high_3 (Length: 433)
Name: NF19338_high_3
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 11347363 - 11346939
Alignment:
| Q |
1 |
tttgcgatactcaattaattatacaacatgtaagcataaataacatgatgattcaacatctcataatattatcaaccatcatctcttaaattagttaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11347363 |
tttgcgatactcaattaattatacaacatgtaagcataaataacatgatgattcaacatctcataatattatcaaccatcatctcttaaattagttaaag |
11347264 |
T |
|
| Q |
101 |
ttcagttttccatccacgagaccatccgatgaccttcccaaatacacctcactccattcttccattccatccctttgaccttacatctctggaattagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11347263 |
ttcagttttccatccacgagaccatccgatgaccttcccaaatacacctcactccattcttccattccatccctttgaccttacatctctggaattagaa |
11347164 |
T |
|
| Q |
201 |
agaaaaatatgcatttccttcaaggtaccatcatcactagtccgggatcattt---------tctcatgctgaaaaacatggatcggatctacaaacata |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11347163 |
agaaaaatatgcatttccttcaaggtaccatcatcactagtccgttatcattttctctagtttctcatgctgtaaaacatggatcggatctacaaacata |
11347064 |
T |
|
| Q |
292 |
gctagatactttctctccataatagatgactactgtagaatgacttcggcattcatgatgaaacataagagtgaagcattctattttttcaaggaatgga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11347063 |
gctagatactttctctccataatagatgactactgtagaatgacttcggcattcatgatgaaacataagagtgaagcattctattttttcaaggaatgga |
11346964 |
T |
|
| Q |
392 |
agattctggtcgagagtcaaacagg |
416 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11346963 |
agattctggtcgagagtcaaacagg |
11346939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University